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AT3G52110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 191 Blast hits to 174 proteins in 54 species: Archae - 0; Bacteria - 7; Metazoa - 45; Fungi - 7; Plants - 40; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW9DeggNOG:ENOG410YJRQEMBL:AL049711EMBL:BT015808
EMBL:BT020217EMBL:CP002686EnsemblPlants:AT3G52110EnsemblPlants:AT3G52110.1
entrez:824374ExpressionAtlas:Q9SUZ4GeneID:824374Gramene:AT3G52110.1
hmmpanther:PTHR36373hmmpanther:PTHR36373:SF1HOGENOM:HOG000239780ncoils:Coil
OMA:SVKKMNKPhylomeDB:Q9SUZ4PIR:T49090Proteomes:UP000006548
RefSeq:NP_190779.3STRING:3702.AT3G52110.1TAIR:AT3G52110UniGene:At.66551
UniGene:At.70198UniProt:Q9SUZ4
Coordinates (TAIR10) chr3:-:19323925..19325632
Molecular Weight (calculated) 41986.30 Da
IEP (calculated) 9.60
GRAVY (calculated) -1.14
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPAHIDWKR IDSRFVEDVF YEHIRAPKWF DFLAPTHFDS IDDDAWFCKP ECNHPKRPED FFSTPTSSKH PSLRDTNETL TEQNQRRRGY ALSPSTPNNQ
101: ESENQNPNLA TPPSYQAKSW RAAIKSTSVK KMNKEVPRLK STQSARNLFS GRDIFGHISD FCYELKRLAT RVTEREDTGK SEVKESHQVG EIVNQPYSVH
201: DLELKKERKP LLEVSKDKLP ESTDVKGSTF KENRRRKKRV DDAENIPVSL NVETVKNKGE EGRRKKRMDD AENIPVPLKL ETIKNKGHER FLQQIRTNPP
301: SPQCFSENRT ATLKPLRTKP TEVLKRKEDE AEEEKNRKSG ESKEATRGLD VLWFLKPCTL AN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)