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AT3G57800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G42300.1); Has 1234 Blast hits to 1224 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 4; Plants - 1221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10844eggNOG:ENOG410IPZEeggNOG:ENOG410YEV1EMBL:AF488593
EMBL:AL049660EMBL:AL132977EMBL:AY085849EMBL:AY139773
EMBL:BT003037EMBL:CP002686EnsemblPlants:AT3G57800EnsemblPlants:AT3G57800.1
entrez:825530Gene3D:4.10.280.10GeneID:825530Genevisible:Q3EAI1
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355hmmpanther:PTHR12565hmmpanther:PTHR12565:SF112HOGENOM:HOG000037005
InParanoid:Q3EAI1InterPro:IPR011598KEGG:ath:AT3G57800ncoils:Coil
OMA:ETEQSFHPaxDb:Q3EAI1Pfam:PF00010Pfam:Q3EAI1
Pfscan:PS50888PhylomeDB:Q3EAI1PIR:T46002PRO:PR:Q3EAI1
PROSITE:PS50888ProteinModelPortal:Q3EAI1Proteomes:UP000006548RefSeq:NP_567057.2
RefSeq:NP_850745.1SMART:SM00353SMR:Q3EAI1STRING:3702.AT3G57800.1
SUPFAM:SSF47459TAIR:AT3G57800UniGene:At.34797UniProt:Q3EAI1
Coordinates (TAIR10) chr3:-:21408034..21411321
Molecular Weight (calculated) 46578.10 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.48
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKGTDFGGKI KIKVCFGVHL LMISGKKVAI FLWKVSCEDL IDCSFSPPRI QGTALVLDEI
301: INHVQSLQRQ VEMLSMRLAA VNPRIDFNLD TILASENGSL MDGSFNAAPM QLAWPQQAIE TEQSFHHRQL QQPPTQQWPF DGLNQPVWGR EEDQAHGNDN
401: SNLMAVSENV MVASANLHPN QVKMEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)