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AT3G57790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G42950.1); Has 3246 Blast hits to 3240 proteins in 468 species: Archae - 6; Bacteria - 1493; Metazoa - 3; Fungi - 347; Plants - 1297; Viruses - 2; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5434eggNOG:ENOG410IG1AEMBL:CP002686EnsemblPlants:AT3G57790
EnsemblPlants:AT3G57790.1entrez:824949Gene3D:2.160.20.10GeneID:824949
GO:GO:0004650GO:GO:0005576GO:GO:0005774GO:GO:0005975
GO:GO:0016829GO:GO:0071555Gramene:AT3G57790.1hmmpanther:PTHR31339
hmmpanther:PTHR31339:SF10InParanoid:F4J3I0InterPro:IPR000743InterPro:IPR011050
InterPro:IPR012334KEGG:ath:AT3G57790OMA:TATDCWIPaxDb:F4J3I0
Pfam:PF00295PRIDE:F4J3I0ProteinModelPortal:F4J3I0Proteomes:UP000006548
RefSeq:NP_567055.1SMR:F4J3I0STRING:3702.AT3G57790.1SUPFAM:SSF51126
TAIR:AT3G57790UniGene:At.28595UniProt:F4J3I0
Coordinates (TAIR10) chr3:-:21405387..21407088
Molecular Weight (calculated) 54101.40 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.11
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)