AT1G03520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT4G03340.1); Has 943 Blast hits to 943 proteins in 116 species: Archae - 0; Bacteria - 40; Metazoa - 553; Fungi - 0; Plants - 315; Viruses - 14; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:877948..879553 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51506.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.72 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 447 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKLYRKLVS FRDPFARVKR HVSSHSGFRA FSDRKWLFPF LASLIMSITL LILLISGQFD NFFGEEDQLP VDVVSESNDY FVESDFKQSM NSTADVNPEP 101: PRLAYLISGT KGDSHRMMRT LQAVYHPRNQ YVLHLDLEAP PRERMELAMS VKTDPTFREM ENVRVMAQSN LVTYKGPTMI ACTLQAVSIL LRESLHWDWF 201: LNLSASDYPL VTQDDLLYVF SNLSRNVNFI ENMQLTGWKL NQRAKSIIVD PALYLSKKSD IAWTTQRRSL PNSFRLFTGS AWIMLTRSFL EYCIWGWDNF 301: PRTILMYYTN FVSSPEGYFH TVICNSKEFI NTAIGHDLHY IAWDSPPKQH PRSLSLKDFD NMVKSKAPFA RKFHKNDPAL DKIDKELLGR THRFAPGGWC 401: VGSSANGNDQ CSVQGDDSVL KPGPGSERLQ ELVQTLSSEE FRRKQCS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)