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AT1G55330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : arabinogalactan protein 21
Curator
Summary (TAIR10)
Encodes a putative arabinogalactan-protein (AGP21).
Computational
Description (TAIR10)
arabinogalactan protein 21 (AGP21); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 12 (TAIR:AT3G13520.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC027034EMBL:AY087780EMBL:AY093045EMBL:BT003426
EMBL:CP002684EnsemblPlants:AT1G55330EnsemblPlants:AT1G55330.1entrez:841979
GeneID:841979Genevisible:Q9C8A4GO:GO:0005886GO:GO:0031225
Gramene:AT1G55330.1hmmpanther:PTHR34114HOGENOM:HOG000029117InParanoid:Q9C8A4
KEGG:ath:AT1G55330OMA:RVFLAIMPaxDb:Q9C8A4Pfam:Q9C8A4
PIR:E96595PRO:PR:Q9C8A4Proteomes:UP000006548RefSeq:NP_564686.1
STRING:3702.AT1G55330.1TAIR:AT1G55330tair10-symbols:AGP21tair10-symbols:ATAGP21
TMHMM:TMhelixUniGene:At.37079UniGene:At.74133UniProt:Q9C8A4
Coordinates (TAIR10) chr1:-:20648634..20648810
Molecular Weight (calculated) 5945.52 Da
IEP (calculated) 4.43
GRAVY (calculated) 1.31
Length 58 amino acids
Sequence (TAIR10)
(BLAST)
1: MEAMKMKMMV FIMVVAVAFS AATAATVEAP APSPTSDAAM FVPALFASVV ALASGFIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)