AT1G64450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycine-rich protein family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycine-rich protein family; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G23930.1); Has 61689 Blast hits to 17372 proteins in 1170 species: Archae - 25; Bacteria - 6104; Metazoa - 45491; Fungi - 2077; Plants - 2819; Viruses - 1028; Other Eukaryotes - 4145 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:23941758..23942786 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35892.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.54 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||
| Length | 342 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKPHDRRRS SGRTNLASCA VATVFLLILL VVLLVVYFTV FKPKDPKISV NAVQLPSFAV SNNTANFSFS QYVAVRNPNR AVFSHYDSSI QLLYSGNQVG 101: FMFIPAGKID SGRIQYMAAT FTVHSFPISP PSSSAISTVS AAVIPDSPII PGPPDFTVTP RNPDSPYFPG YPESPDLPGN PGSPDFSGNP GPPSFPRNPG 201: SPEFPGNPGA PIIPRNPGSP EFPINPPRNP GAPVIPRNPN PPVFPGNPRS MGPPGFPGIG GPPGFPGTPF GGGGTGPTLG DGYANPGFGY GNRVGPTMEI 301: ESKMELAGRV KVLHVFTHHV VAKSDCRVTV SIADGSVLGF HC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)