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AT1G21090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cupredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cupredoxin superfamily protein; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972); Has 232 Blast hits to 228 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 16; Fungi - 9; Plants - 195; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX4FeggNOG:ENOG410YX7SEMBL:BT026415EMBL:CP002684
EnsemblPlants:AT1G21090EnsemblPlants:AT1G21090.1entrez:838705Gene3D:2.60.40.420
GeneID:838705GO:GO:0016021GO:GO:0031225Gramene:AT1G21090.1
hmmpanther:PTHR34662hmmpanther:PTHR34662:SF3HOGENOM:HOG000120100InterPro:IPR008972
KEGG:ath:AT1G21090OMA:YDLYIFRPhylomeDB:Q0V805Proteomes:UP000006548
RefSeq:NP_564135.1SMR:Q0V805SUPFAM:SSF49503TAIR:AT1G21090
TMHMM:TMhelixUniGene:At.28141UniGene:At.75335UniProt:Q0V805
Coordinates (TAIR10) chr1:+:7384854..7386199
Molecular Weight (calculated) 26222.40 Da
IEP (calculated) 8.58
GRAVY (calculated) 0.12
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCSQKHLTS MLFFYFFCFL SLFSRPSLSA TFLVDGVSVW KSPTVHTGDS VIFRHKYGYD LYIFRNKDAF NVCNFTQATL LTKPNSTSFT WYPSRTGSYY
101: FSFTNNTSLP KTCQLNQKLT VQVILAAASP PSQPPATAPV PVSEGGVISS PSSYPWPLGP REGSAFSPGP SPSEITSVTV PGKDGVPFIN SNPAVPLPTG
201: DVDSTSINPL PTSTNSAHQV MMMTLTVKLG LCCVAMFLFL VL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)