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AT5G22860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Serine carboxypeptidase S28 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity, peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G24280.1); Has 1224 Blast hits to 1198 proteins in 170 species: Archae - 0; Bacteria - 11; Metazoa - 605; Fungi - 185; Plants - 238; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G22860-MONOMERBioCyc:ARA:GQT-110-MONOMEReggNOG:ENOG410Y38AeggNOG:KOG2183
EMBL:AB005243EMBL:CP002688EnsemblPlants:AT5G22860EnsemblPlants:AT5G22860.1
entrez:832349ESTHER:arath-Q8LFB7ExpressionAtlas:Q9FFC2Gene3D:3.40.50.1820
GeneID:832349GO:GO:0004180GO:GO:0008236Gramene:AT5G22860.1
hmmpanther:PTHR11010hmmpanther:PTHR11010:SF47InterPro:IPR008758InterPro:IPR029058
MEROPS:S28.A03OMA:CAPLNGSPfam:PF05577PhylomeDB:Q9FFC2
Proteomes:UP000006548RefSeq:NP_851059.1SMR:Q9FFC2STRING:3702.AT5G22860.1
SUPFAM:SSF53474TAIR:AT5G22860UniGene:At.27190UniProt:Q9FFC2
Coordinates (TAIR10) chr5:-:7639511..7642945
Molecular Weight (calculated) 56457.40 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.16
Length 502 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLPYTILIL FIFSTSSSYL IPLAHSKIAR LGISSKTLKN EPDGSTQKVD ESNLKMYYFN QTLDHFTFTP ESYMTFQQRY AIDSTHWGGA KANAPILAFL
101: GEESSLDSDL AAIGFLRDNG PRLNALLVYI EHRYYGETMP FGSAEEALKN ASTLGYLNAA QALADYAAIL LHVKEKYSTN HSPIIVIGGS YGGMLAAWFR
201: LKYPHIALGA LASSAPLLYF EDTRPKFGYY YIVTKVFKEA SERCYNTIRN SWIEIDRVAG KPNGLSILSK QFKTCAPLNG SFDIKDFLDT IYAEAVQYNR
301: GPNFWVAKVC NAINANPPNR RYNLLDRIFA GVVALVGNRT CYDTKMFAQP TNNNIAWRWQ SCSEIVMPVG YDKQDTMFPT APFNMTSYID GCKSYHGVTP
401: RPHWITTYFG IQEVKLILQK FGSNIIFSNG LSDPYSVGGV LEDISDTLVA ITTKNGSHCL DITLKSKEDP EWLVIQREKE IKVIDSWIST YQNDLRDLNM
501: PV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)