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AT5G24530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.714
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.
Computational
Description (TAIR10)
DOWNY MILDEW RESISTANT 6 (DMR6); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: response to fungus, response to bacterium, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G10490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G24530-MONOMEREC:1.14.11.-EC:1.14.13.-eggNOG:COG3491
eggNOG:KOG0143EMBL:AB010068EMBL:AF386975EMBL:AY081455
EMBL:AY085392EMBL:CP002688EnsemblPlants:AT5G24530EnsemblPlants:AT5G24530.1
entrez:832524Gene3D:2.60.120.330GeneID:832524GO:GO:0002229
GO:GO:0002239GO:GO:0009617GO:GO:0009620GO:GO:0009751
GO:GO:0009813GO:GO:0033759GO:GO:0042742GO:GO:0046244
GO:GO:0046872GO:GO:0051553Gramene:AT5G24530.1gramene_pathway:1.14.11.9
gramene_pathway:PWY-5152gramene_pathway:PWY1F-823gramene_pathway:PWY1F-FLAVSYNhmmpanther:PTHR10209
hmmpanther:PTHR10209:SF111HOGENOM:HOG000276735IntAct:Q9FLV0InterPro:IPR005123
InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT5G24530OMA:HQACARF
PaxDb:Q9FLV0Pfam:PF03171Pfam:PF14226Pfscan:PS51471
PhylomeDB:Q9FLV0PROSITE:PS51471ProteinModelPortal:Q9FLV0Proteomes:UP000006548
RefSeq:NP_197841.1SMR:Q9FLV0STRING:3702.AT5G24530.1SUPFAM:SSF51197
TAIR:AT5G24530tair10-symbols:DMR6UniGene:At.23761UniProt:Q9FLV0
Coordinates (TAIR10) chr5:+:8378964..8383154
Molecular Weight (calculated) 39365.70 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.44
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAKLISTGF RHTTLPENYV RPISDRPRLS EVSQLEDFPL IDLSSTDRSF LIQQIHQACA RFGFFQVINH GVNKQIIDEM VSVAREFFSM SMEEKMKLYS
101: DDPTKTTRLS TSFNVKKEEV NNWRDYLRLH CYPIHKYVNE WPSNPPSFKE IVSKYSREVR EVGFKIEELI SESLGLEKDY MKKVLGEQGQ HMAVNYYPPC
201: PEPELTYGLP AHTDPNALTI LLQDTTVCGL QILIDGQWFA VNPHPDAFVI NIGDQLQALS NGVYKSVWHR AVTNTENPRL SVASFLCPAD CAVMSPAKPL
301: WEAEDDETKP VYKDFTYAEY YKKFWSRNLD QEHCLENFLN N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)