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AT2G40460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.603
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 7555 Blast hits to 7238 proteins in 1401 species: Archae - 0; Bacteria - 3710; Metazoa - 634; Fungi - 431; Plants - 2228; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink).
Protein Annotations
BioGrid:3978eggNOG:COG3104eggNOG:KOG1237EMBL:AC002336
EMBL:AY063897EMBL:AY094400EMBL:AY150513EMBL:BT002242
EMBL:CP002685EnsemblPlants:AT2G40460EnsemblPlants:AT2G40460.1entrez:818640
GeneID:818640Genevisible:Q8VZR7GO:GO:0005215GO:GO:0009624
GO:GO:0016021Gramene:AT2G40460.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF155
HOGENOM:HOG000237400InParanoid:Q8VZR7InterPro:IPR000109InterPro:IPR020846
iPTMnet:Q8VZR7KEGG:ath:AT2G40460OMA:MLPQYILPANTHER:PTHR11654
PaxDb:Q8VZR7Pfam:PF00854Pfam:Q8VZR7PhylomeDB:Q8VZR7
PIR:G84829PRIDE:Q8VZR7PRO:PR:Q8VZR7ProteinModelPortal:Q8VZR7
Proteomes:UP000006548RefSeq:NP_181578.1SMR:Q8VZR7STRING:3702.AT2G40460.1
SUPFAM:SSF103473TAIR:AT2G40460TMHMM:TMhelixUniGene:At.12204
UniProt:Q8VZR7
Coordinates (TAIR10) chr2:+:16897123..16901171
Molecular Weight (calculated) 64827.90 Da
IEP (calculated) 9.43
GRAVY (calculated) 0.23
Length 583 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAAKVYTQD GTVDLQGRPV LASKTGRWRA CSFLLGYEAF ERMAFYGIAS NLVNYLTKRL HEDTISSVRN VNNWSGAVWI TPIAGAYIAD SYIGRFWTFT
101: ASSLIYVLGM ILLTMAVTVK SLRPTCENGV CNKASSLQVT FFYISLYTIA IGAGGTKPNI STFGADQFDS YSIEEKKQKV SFFNWWMFSS FLGALFATLG
201: LVYIQENLGW GLGYGIPTVG LLVSLVVFYI GTPFYRHKVI KTDNLAKDLV QVPIAAFKNR KLQCPDDHLE LYELDSHYYK SNGKHQVHHT PVFRFLDKAA
301: IKTSSRVPCT VTKVEVAKRV LGLIFIWLVT LIPSTLWAQV NTLFVKQGTT LDRKIGSNFQ IPAASLGSFV TLSMLLSVPM YDQSFVPFMR KKTGNPRGIT
401: LLQRLGVGFA IQIVAIAIAS AVEVKRMRVI KEFHITSPTQ VVPMSIFWLL PQYSLLGIGD VFNAIGLLEF FYDQSPEEMQ SLGTTFFTSG IGLGNFLNSF
501: LVTMIDKITS KGGGKSWIGN NLNDSRLDYY YGFLVVISIV NMGLFVWAAS KYVYKSDDDT KEFSGGGCVQ MEAKALDTSP LSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)