AT2G40460.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.603 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 7555 Blast hits to 7238 proteins in 1401 species: Archae - 0; Bacteria - 3710; Metazoa - 634; Fungi - 431; Plants - 2228; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:16897123..16901171 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 64827.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 583 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEAAKVYTQD GTVDLQGRPV LASKTGRWRA CSFLLGYEAF ERMAFYGIAS NLVNYLTKRL HEDTISSVRN VNNWSGAVWI TPIAGAYIAD SYIGRFWTFT 101: ASSLIYVLGM ILLTMAVTVK SLRPTCENGV CNKASSLQVT FFYISLYTIA IGAGGTKPNI STFGADQFDS YSIEEKKQKV SFFNWWMFSS FLGALFATLG 201: LVYIQENLGW GLGYGIPTVG LLVSLVVFYI GTPFYRHKVI KTDNLAKDLV QVPIAAFKNR KLQCPDDHLE LYELDSHYYK SNGKHQVHHT PVFRFLDKAA 301: IKTSSRVPCT VTKVEVAKRV LGLIFIWLVT LIPSTLWAQV NTLFVKQGTT LDRKIGSNFQ IPAASLGSFV TLSMLLSVPM YDQSFVPFMR KKTGNPRGIT 401: LLQRLGVGFA IQIVAIAIAS AVEVKRMRVI KEFHITSPTQ VVPMSIFWLL PQYSLLGIGD VFNAIGLLEF FYDQSPEEMQ SLGTTFFTSG IGLGNFLNSF 501: LVTMIDKITS KGGGKSWIGN NLNDSRLDYY YGFLVVISIV NMGLFVWAAS KYVYKSDDDT KEFSGGGCVQ MEAKALDTSP LSI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)