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AT5G50800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nodulin MtN3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nodulin MtN3 family protein; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT4G25010.1); Has 996 Blast hits to 949 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 0; Plants - 618; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Protein Annotations
BioGrid:20398eggNOG:ENOG4111M4ReggNOG:KOG1623EMBL:AB025617
EMBL:AY087516EMBL:CP002688EnsemblPlants:AT5G50800EnsemblPlants:AT5G50800.1
entrez:835152GeneID:835152Genevisible:Q9FGQ2GO:GO:0005887
GO:GO:0008515GO:GO:0015770GO:GO:0016021GO:GO:0034219
GO:GO:0051119Gramene:AT5G50800.1hmmpanther:PTHR10791hmmpanther:PTHR10791:SF65
HOGENOM:HOG000237944InParanoid:Q9FGQ2InterPro:IPR004316KEGG:ath:AT5G50800
KO:K15382OMA:WISIEICPaxDb:Q9FGQ2Pfam:PF03083
Pfam:Q9FGQ2PhylomeDB:Q9FGQ2PRIDE:Q9FGQ2PRO:PR:Q9FGQ2
ProteinModelPortal:Q9FGQ2Proteomes:UP000006548RefSeq:NP_199893.1SMR:Q9FGQ2
STRING:3702.AT5G50800.1TAIR:AT5G50800tair10-symbols:AtSWEET13tair10-symbols:SWEET13
TMHMM:TMhelixUniGene:At.29712UniProt:Q9FGQ2
Coordinates (TAIR10) chr5:-:20665280..20667140
Molecular Weight (calculated) 32505.40 Da
IEP (calculated) 9.80
GRAVY (calculated) 0.59
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MALTNNLWAF VFGILGNIIS FVVFLAPVPT FVRICKKKST EGFQSLPYVS ALFSAMLWIY YAMQKDGTAF LLITINAFGC VIETIYIVLF VSYANKKTRI
101: STLKVLGLLN FLGFAAIVLV CELLTKGSTR EKVLGGICVG FSVSVFAAPL SIMRVVVRTR SVEFMPFSLS LFLTISAVTW LFYGLAIKDF YVALPNVLGA
201: FLGAVQMILY IIFKYYKTPV AQKTDKSKDV SDHSIDIAKL TTVIPGAVLD SAVHQPPALH NVPETKIQLT EVKSQNMTDP KDQINKDVQK QSQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)