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AT3G46830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A2C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A2C (RABA2c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2D (TAIR:AT5G59150.1); Has 28770 Blast hits to 28717 proteins in 774 species: Archae - 26; Bacteria - 141; Metazoa - 14934; Fungi - 4337; Plants - 3364; Viruses - 20; Other Eukaryotes - 5948 (source: NCBI BLink).
Protein Annotations
BioGrid:9156eggNOG:COG1100eggNOG:KOG0087EMBL:AL096859
EMBL:AY065380EMBL:AY087450EMBL:AY096545EMBL:CP002686
EMBL:Y08904EnsemblPlants:AT3G46830EnsemblPlants:AT3G46830.1entrez:823836
Gene3D:3.40.50.300GeneID:823836Genevisible:Q96283GO:GO:0005525
GO:GO:0005768GO:GO:0005794GO:GO:0005829GO:GO:0005886
GO:GO:0007264GO:GO:0009504GO:GO:0009506GO:GO:0010008
GO:GO:0015031Gramene:AT3G46830.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF582
HOGENOM:HOG000233968InParanoid:Q96283InterPro:IPR001806InterPro:IPR005225
InterPro:IPR027417KEGG:ath:AT3G46830OMA:MKKGCCSPaxDb:Q96283
Pfam:PF00071Pfam:Q96283Pfscan:PS51419PhylomeDB:Q96283
PIR:T12965PRIDE:Q96283PRO:PR:Q96283PROSITE:PS51419
ProteinModelPortal:Q96283Proteomes:UP000006548Reactome:R-ATH-5620916RefSeq:NP_190267.1
SMR:Q96283STRING:3702.AT3G46830.1SUPFAM:SSF52540TAIR:AT3G46830
tair10-symbols:ATRAB-A2Ctair10-symbols:ATRAB11Atair10-symbols:ATRABA2Ctair10-symbols:RAB-A2C
tair10-symbols:RABA2cTIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.109
UniGene:At.73032UniProt:Q96283
Coordinates (TAIR10) chr3:-:17246699..17248362
Molecular Weight (calculated) 23850.10 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.28
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MTHRVDQEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTTQVEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVAEEDG QSLAEKEGLS FLETSALEAT NVEKAFQTIL GEIYHIISKK ALAAQEAAAA NSAIPGQGTT
201: INVDDTSGGA KRACCSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)