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AT5G59150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.333
golgi 0.333
plasma membrane 0.333
ASURE: cytosol,golgi,plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:20843791 (2010): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A2D
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A2D (RABA2D); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2C (TAIR:AT3G46830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0087EMBL:AB016890EMBL:AF370127
EMBL:AY040051EMBL:CP002688EnsemblPlants:AT5G59150EnsemblPlants:AT5G59150.1
entrez:836033Gene3D:3.40.50.300GeneID:836033Genevisible:Q9FIF9
GO:GO:0005525GO:GO:0005768GO:GO:0005794GO:GO:0005886
GO:GO:0007264GO:GO:0009504GO:GO:0010008GO:GO:0015031
GO:GO:0042546Gramene:AT5G59150.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF582
HOGENOM:HOG000233968InParanoid:Q9FIF9InterPro:IPR001806InterPro:IPR005225
InterPro:IPR027417KEGG:ath:AT5G59150OMA:IAGQPESPaxDb:Q9FIF9
Pfam:PF00071Pfam:Q9FIF9Pfscan:PS51419PhylomeDB:Q9FIF9
PRIDE:Q9FIF9PRO:PR:Q9FIF9PROSITE:PS51419ProteinModelPortal:Q9FIF9
Proteomes:UP000006548Reactome:R-ATH-5620916RefSeq:NP_200723.1SMR:Q9FIF9
STRING:3702.AT5G59150.1SUPFAM:SSF52540TAIR:AT5G59150tair10-symbols:ATRAB-A2D
tair10-symbols:ATRABA2Dtair10-symbols:RABA2DTIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.24606UniProt:Q9FIF9
Coordinates (TAIR10) chr5:+:23876858..23878244
Molecular Weight (calculated) 23817.20 Da
IEP (calculated) 5.72
GRAVY (calculated) -0.22
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHRVEQDYD YLFKIVLIGD SGVGKTNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVLRWLREL RDHADSNIVI MMAGNKADLN HLRSVAEEDG QTLAETEGLS FLETSALEAT NVEKAFQTVL AEIYHIISKK ALAAQEAAAA NSAIPGQGTT
201: INVEDTSGAG KRGCCST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)