AT5G45070.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.468 plasma membrane 0.455 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : phloem protein 2-A8 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
phloem protein 2-A8 (PP2-A8); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: phloem protein 2-A6 (TAIR:AT5G45080.1); Has 1773 Blast hits to 1692 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1773; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:18187899..18189362 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 40108.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.95 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 354 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAASSSVRPT PTGPQVFINF RGKDLRNGFL SFLEPAMREA NINVFIDKDE VVGTDLVNLF VRIQESRVAV VIFSKDYTSS EWCLDELAEI KDCINQGGLN 101: AIPIFYKLAP SSVLELKGGF GDTFRVLKEK YKNDPERTQK WQEALESIPK LKGLRLAEKS DRNEREFMNE MILEIQKALW QIAMKGNPKV ESNSKGGFLV 201: PARRLTIAHS DNPEKWTWSA IYDRPHKADI EIATMINTHA LIKISGDFHT RKLIPGKKYE VVFIVSLDDT SLGWKNEVTL TLKVVMSDEA ANVKAKKLCL 301: DEYIGENWVD IPVGDFEAPQ EKEDAKIFFS MYQLLNTERK SGLVVKGFAI RPAQ |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)