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AT3G57050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cystathionine beta-lyase
Curator
Summary (TAIR10)
Encodes second enzyme in the methionine biosynthetic pathway
Computational
Description (TAIR10)
cystathionine beta-lyase (CBL); FUNCTIONS IN: cystathionine beta-lyase activity; INVOLVED IN: L-methionine biosynthetic process from L-homoserine via cystathionine; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Cystathionine beta-lyase, eukaryotic (InterPro:IPR006238), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT3G01120.1); Has 21174 Blast hits to 21168 proteins in 2454 species: Archae - 221; Bacteria - 12373; Metazoa - 223; Fungi - 823; Plants - 274; Viruses - 1; Other Eukaryotes - 7259 (source: NCBI BLink).
Protein Annotations
EC:4.4.1.8eggNOG:COG0626eggNOG:KOG0053EMBL:AK317075
EnsemblPlants:AT3G57050EnsemblPlants:AT3G57050.1entrez:824872ExpressionAtlas:B9DGA0
Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:824872GO:GO:0004121
GO:GO:0030170GO:GO:0071266Gramene:AT3G57050.1gramene_pathway:4.4.1.8
gramene_pathway:PWY-702gramene_pathway:PWY-801gramene_plant_reactome:1119400gramene_plant_reactome:6875495
hmmpanther:PTHR11808hmmpanther:PTHR11808:SF50InterPro:IPR000277InterPro:IPR006238
InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424KEGG:00270+4.4.1.8
KEGG:00450+4.4.1.8KEGG:ath:AT3G57050KO:K01760OMA:PPIYQVS
PANTHER:PTHR11808PaxDb:B9DGA0PDB:1IBJPfam:P53780
Pfam:PF01053PhylomeDB:B9DGA0PIRSF:PIRSF001434PRIDE:B9DGA0
PROSITE:PS00868ProteinModelPortal:B9DGA0RefSeq:NP_191264.1scanprosite:PS00868
SMR:B9DGA0STRING:3702.AT3G57050.1SUPFAM:SSF53383TAIR:AT3G57050
tair10-symbols:CBLTIGRfam:TIGR01329TIGRFAMs:TIGR01329UniGene:At.24673
unipathway:UPA00051UniProt:B9DGA0UniProt:P53780
Coordinates (TAIR10) chr3:-:21111939..21114521
Molecular Weight (calculated) 50432.40 Da
IEP (calculated) 7.40
GRAVY (calculated) -0.10
Length 464 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSLSLHSS FVPSFADLSD RGLISKNSPT SVSISKVPTW EKKQISNRNS FKLNCVMEKS VDGQTHSTVN NTTDSLNTMN IKEEASVSTL LVNLDNKFDP
101: FDAMSTPLYQ TATFKQPSAI ENGPYDYTRS GNPTRDALES LLAKLDKADR AFCFTSGMAA LSAVTHLIKN GEEIVAGDDV YGGSDRLLSQ VVPRSGVVVK
201: RVNTTKLDEV AAAIGPQTKL VWLESPTNPR QQISDIRKIS EMAHAQGALV LVDNSIMSPV LSRPLELGAD IVMHSATKFI AGHSDVMAGV LAVKGEKLAK
301: EVYFLQNSEG SGLAPFDCWL CLRGIKTMAL RIEKQQENAR KIAMYLSSHP RVKKVYYAGL PDHPGHHLHF SQAKGAGSVF SFITGSVALS KHLVETTKYF
401: SIAVSFGSVK SLISMPCFMS HASIPAEVRE ARGLTEDLVR ISAGIEDVDD LISDLDIAFK TFPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)