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AT4G13430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plastid
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : isopropyl malate isomerase large subunit 1
Curator
Summary (TAIR10)
Encodes methylthioalkylmalate isomerase.
Computational
Description (TAIR10)
isopropyl malate isomerase large subunit 1 (IIL1); FUNCTIONS IN: lyase activity, intramolecular transferase activity, transferring hydroxy groups; INVOLVED IN: glucosinolate biosynthetic process, response to cadmium ion, metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Homoaconitase/3-isopropylmalate dehydratase, small/large subunit (InterPro:IPR015936), Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup (InterPro:IPR006251), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitase 2 (TAIR:AT4G26970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G13430-MONOMERBioCyc:MetaCyc:AT4G13430-MONOMERBRENDA:4.2.1.33EC:4.2.1.33
eggNOG:COG0065eggNOG:KOG0454EMBL:AL049608EMBL:AL161536
EMBL:AY045842EMBL:AY117151EMBL:CP002687EnsemblPlants:AT4G13430
EnsemblPlants:AT4G13430.1entrez:826975Gene3D:3.30.499.10Gene3D:3.40.1060.10
GeneID:826975Genevisible:Q94AR8GO:GO:0003861GO:GO:0009098
GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0019761
GO:GO:0046686GO:GO:0046872GO:GO:0050486GO:GO:0051539
Gramene:AT4G13430.1gramene_pathway:5.4.4.-gramene_pathway:PWYQT-4450gramene_plant_reactome:1119540
gramene_plant_reactome:6875928hmmpanther:PTHR11670HOGENOM:HOG000226971InParanoid:Q94AR8
InterPro:IPR001030InterPro:IPR006251InterPro:IPR015931InterPro:IPR015932
InterPro:IPR015937iPTMnet:Q94AR8KEGG:00290+4.2.1.33KEGG:ath:AT4G13430
KO:K01703OMA:KIEPQVAPANTHER:PTHR11670PaxDb:Q94AR8
Pfam:PF00330Pfam:Q94AR8PhylomeDB:Q94AR8PIR:T06300
PRIDE:Q94AR8PRINTS:PR00415PRO:PR:Q94AR8ProteinModelPortal:Q94AR8
Proteomes:UP000006548RefSeq:NP_567405.1SMR:Q94AR8STRING:3702.AT4G13430.1
SUPFAM:SSF53732TAIR:AT4G13430tair10-symbols:ATLEUC1tair10-symbols:IIL1
TIGRfam:TIGR01343TIGRFAMs:TIGR01343UniGene:At.24538UniGene:At.67680
UniPathway:UPA00048UniProt:Q94AR8
Coordinates (TAIR10) chr4:-:7804194..7807789
Molecular Weight (calculated) 55017.00 Da
IEP (calculated) 7.91
GRAVY (calculated) -0.17
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVISSSPF LCKSSSKSDL GISSFPKSSQ ISIHRCQKKS ISRKIVSVMA PQKDRSPGTT GSVKTGMTMT EKILARASEK SLVVPGDNIW VNVDVLMTHD
101: VCGPGAFGIF KREFGEKAKV WDPEKIVVIP DHYIFTADKR ANRNVDIMRE HCREQNIKYF YDITDLGNFK ANPDYKGVCH VALAQEGHCR PGEVLLGTDS
201: HTCTAGAFGQ FATGIGNTDA GFVLGTGKIL LKVPPTMRFI LDGEMPSYLQ AKDLILQIIG EISVAGATYK TMEFSGTTIE SLSMEERMTL CNMVVEAGGK
301: NGVIPPDATT LNYVENRTSV PFEPVYSDGN ASFVADYRFD VSKLEPVVAK PHSPDNRALA RECKDVKIDR VYIGSCTGGK TEDFMAAAKL FHAAGRKVKV
401: PTFLVPATQK VWMDVYALPV PGAGGKTCAQ IFEEAGCDTP ASPSCGACLG GPADTYARLN EPQVCVSTTN RNFPGRMGHK EGQIYLASPY TAAASALTGR
501: VADPREFLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)