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AT2G47710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Adenine nucleotide alpha hydrolases-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49050.1); Has 2830 Blast hits to 2747 proteins in 619 species: Archae - 112; Bacteria - 1833; Metazoa - 129; Fungi - 32; Plants - 667; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0589eggNOG:ENOG410IW03EMBL:AC005309EMBL:AY054620
EMBL:AY081535EMBL:CP002685EnsemblPlants:AT2G47710EnsemblPlants:AT2G47710.1
entrez:819384Gene3D:3.40.50.620GeneID:819384GO:GO:0005773
GO:GO:0005794GO:GO:0005886GO:GO:0006950GO:GO:0016787
Gramene:AT2G47710.1hmmpanther:PTHR31964hmmpanther:PTHR31964:SF16HOGENOM:HOG000238898
IntAct:O82240InterPro:IPR006015InterPro:IPR006016InterPro:IPR014729
KEGG:ath:AT2G47710OMA:GKMTMVVPfam:PF00582PhylomeDB:O82240
PIR:F84918PRINTS:PR01438Proteomes:UP000006548RefSeq:NP_566108.1
SMR:O82240STRING:3702.AT2G47710.1SUPFAM:SSF52402TAIR:AT2G47710
UniGene:At.20504UniProt:O82240
Coordinates (TAIR10) chr2:-:19555045..19555956
Molecular Weight (calculated) 17301.90 Da
IEP (calculated) 8.02
GRAVY (calculated) 0.13
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MATGDGKSVM VVGVDDSEQS TYALEWTLDR FFAPYAPNYP FKLFIVHAKP NAVSAVGLAG PGTAEVVPYV DADLKHTAAK VVEKAKAICQ SRSVHGAVIE
101: VFEGDARNIL CEVVDKHHAS ILVVGSHGYG AIKRAVLGST SDYCAHHAHC SVMIVKKPKI KV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)