AT2G32910.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DCD (Development and Cell Death) domain protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DCD (Development and Cell Death) domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G61910.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:13959685..13961989 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78335.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.23 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.00 | ||||||||||||||||||||||||||||
| Length | 691 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELQDAMNDE NEKAPEASVV QNDEVSGNNG DVVVEAEEKD GNEVVEPVDS GKSKADDEFV ESLLDTNQDL ATFKIPVEEN DTENVTVEEP SLPASVEATS 101: SGMKKPQGLP AKTKIVKKVK KLVKRKIIKG TAAQVAGEEN VIKEGEQSGE PSLGESEKDK DSEPYLGGND MEFQKELAVA TQPAVDVKVV GGEPSGKETL 201: KEVKGKAKRQ REKKFKGTLA QGMDKESAID KRDVGASPGG NLIVAKKAID GSVEAKTGLT EDKRRKRKRP TKQVRDSNKK LRQDVVAGAD TTEQGMEERK 301: EQPVDPEKRE MDGPGKVKIG GLIFMCNTKT RPDCFRFSVM GVQEKRKDFV KGIKPGLKLF LYDYDLKLLY GIFEASSAGG MKLERNAFGG SFPAQVRFKV 401: FSDCIPLAES QFKKAIIENY NNKNKFKTEL THKQVFKLKK LFRPAAIPAQ VTHTQQIPVP RDTDRKRSDR DRYAPGSSRG HPTRKHERRR ASPPPRREEQ 501: PRDLYLSERE YRTYGLRGGE TTQHYQIPPP ESSSSYHIVN RDRVHLDSYR SSMDHDRLLR QAEIERHDRR EVRHPHLSER DYQTYDHLTS RREILVRNSP 601: DPPDSAVTLD SYRRDPYYIC ERHALERPPR TYMVSPGRQD DDLYSRYVTP DSLAEYYRSS QRYPSVTEPE LPPSLVTSRY AYSRSLPYSH R |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)