AT3G58050.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41; Bacteria - 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses - 46; Other Eukaryotes - 4915 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:21492539..21497018 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 136828.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.44 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||
| Length | 1209 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPGLAQRNND QYSFGFWSKE IDGVSYNQLQ KFWSELSPKA RQELLKIDKQ TLFEQARKNM YCSRCNGLLL EGFLQIVMHG KSLHPEGSLG NSPCNKSGGS 0101: KYQYDCNAVV SNGCADEMQD PSVHPWGGLT TTRDGSLTLL DCYLYAKSLK GLQNVFDSAP ARERERELLY PDACGGGGRG WISQGIASFG RGHGTRETCA 0201: LHTARLSCDT LVDFWSALSE DTRQSLLRMK EEDFMERLRY RICYHSSYHI LNCKMNRHFV VWTIQDVLTK FDSKRFCRDC RRNVIREFKE LKELKRMRRE 0301: PRCTTWFCVA NTTFQYEVSI DSVKADWRET FSENAGKYHH FEWAIGSGEG KCDILKFENV GMNGRVQVNG LNLRGLNSCY ITLRAYKLDG RWSEVSAKAH 0401: ALKGQNCVHG RLVVGDGFVS IKRGESIRRF FEHAEEAEEE EDEDMMDKDG NELDGECSRP QKHAKSPELA REFLLDAATV IFKEQVEKAF REGTARQNAH 0501: SIFVCLTLKL LEQHLHVACK EIITLEKQVK LLEEEEKEKR EEEERKEKKR SKEREKKLRK KERLKEKDKG KEKKNPECSD KDMLLNSSRE EEDLPNLYDE 0601: TNNTINSEES EIETGYADLS PPGSPDVQER QCLDGCPSPR AENHYCDRPD RDIKDLEDEN VYFTNDHQKP VHQNARYWKE VQSDNALRWS DKRRYSDNAS 0701: FVSRSEARYR NDRLEVPSRG FNGSNRQLRV NASKTGGLNG IKSHEKFQCC DNRISERFDF SSCSCKPSCE YRAKVEPKTA GSRSTREPKT ISNSDSALDA 0801: SKPVFQGNRY TQPDYTRELR LKSKVGVGPN PSTTRDSLHS KQVWEPMEPK KYPRSNSYSE VTVRCSTFKA EEIEDAIVAE NSSDLLSQCK VTEKLDNIKL 0901: KDENSMESGE TKNGWHLKDP MMSSTSSSDN CSSCLSEGES NTVSSNNGNT ESSSTSDSED ASQQSEGRES IVVGTQNDIL IPDTTGKSKI PETPIVVTGN 1001: NMDNNSNNNM VHGLVDVQPQ GGMFPHLLTQ NLQYPVFQTA SPMGYFHQAP PVSWPTGPAN GLIPFPHPNP YLYTGPLGYS MNGDPPLCLQ YGSPLNHAAT 1101: PFFNPGPVPV FHPFSKTNTE DQAQNLEPPL ELNCLAPPET QTVNEDSFSL FHFSGPVGLS TGSKSKPAHS KDGILRDVVG NIYTKAKESK EVEEYNLFAT 1201: GNGLRFSLF |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)