suba logo
AT1G67940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : non-intrinsic ABC protein 3
Curator
Summary (TAIR10)
member of NAP subfamily
Computational
Description (TAIR10)
non-intrinsic ABC protein 3 (NAP3); FUNCTIONS IN: transporter activity; INVOLVED IN: phosphate transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate transport system permease protein 1 (InterPro:IPR005670), ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 7 (TAIR:AT5G46540.1); Has 422748 Blast hits to 381356 proteins in 3991 species: Archae - 7530; Bacteria - 326504; Metazoa - 9961; Fungi - 7250; Plants - 4967; Viruses - 18; Other Eukaryotes - 66518 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2760-MONOMERBioGrid:28343eggNOG:COG1117eggNOG:ENOG410INIZ
EMBL:AC012563EMBL:AK117705EMBL:AY086511EMBL:BT005105
EMBL:CP002684EnsemblPlants:AT1G67940EnsemblPlants:AT1G67940.1entrez:843122
ExpressionAtlas:Q9C9W0Gene3D:3.40.50.300GeneID:843122Genevisible:Q9C9W0
GO:GO:0005215GO:GO:0005524GO:GO:0005774GO:GO:0005886
GO:GO:0016887Gramene:AT1G67940.1hmmpanther:PTHR24220InParanoid:Q9C9W0
InterPro:IPR003439InterPro:IPR003593InterPro:IPR017871InterPro:IPR027417
iPTMnet:Q9C9W0KEGG:ath:AT1G67940OMA:DIPKGMIPaxDb:Q9C9W0
Pfam:PF00005Pfam:Q9C9W0Pfscan:PS50893PhylomeDB:Q9C9W0
PIR:C96702PRIDE:Q9C9W0PRO:PR:Q9C9W0PROSITE:PS00211
PROSITE:PS50893ProteinModelPortal:Q9C9W0Proteomes:UP000006548RefSeq:NP_176961.1
scanprosite:PS00211SMART:SM00382SMR:Q9C9W0STRING:3702.AT1G67940.1
SUPFAM:SSF52540TAIR:AT1G67940tair10-symbols:ATNAP3tair10-symbols:AtSTAR1
tair10-symbols:NAP3TCDB:3.A.1.139.4UniGene:At.27658UniGene:At.48348
UniProt:D6RVY5UniProt:Q9C9W0
Coordinates (TAIR10) chr1:+:25477805..25478667
Molecular Weight (calculated) 28678.70 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.01
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSLWSNESD GSLREHLVDV VVSGSEPKIR VHDLTRVADD GSRILKGVTI DIPKGMIVGV IGPSGSGKST FLRSLNRLWE PPESTVFLDG EDITNVDVIA
101: LRRRVGMLFQ LPVLFQGTVA DNVRYGPNLR GEKLSDEEVY KLLSLADLDA SFAKKTGAEL SVGQAQRVAL ARTLANEPEV LLLDEPTSAL DPISTENIED
201: VIVKLKKQRG ITTVIVSHSI KQIQKVADIV CLVVDGEIVE VLKPSELSHA THPMAQRFLQ LSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)