suba logo
AT2G01540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.857
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G70790.1); Has 3447 Blast hits to 2959 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 1768; Fungi - 600; Plants - 764; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5038eggNOG:KOG1030EMBL:AC005560EMBL:AY062604
EMBL:AY093363EMBL:CP002685EnsemblPlants:AT2G01540EnsemblPlants:AT2G01540.1
entrez:814683Gene3D:2.60.40.150GeneID:814683Genevisible:Q9ZVF1
GO:GO:0005096GO:GO:0005543GO:GO:0005634GO:GO:0005773
GO:GO:0005886GO:GO:0009738GO:GO:0009789GO:GO:0043547
GO:GO:0046872Gramene:AT2G01540.1hmmpanther:PTHR23180hmmpanther:PTHR23180:SF268
HOGENOM:HOG000238659InParanoid:Q9ZVF1IntAct:Q9ZVF1InterPro:IPR000008
KEGG:ath:AT2G01540OMA:PSRHNCLPaxDb:Q9ZVF1Pfam:PF00168
Pfscan:PS50004PhylomeDB:Q9ZVF1PIR:A84426PRIDE:Q9ZVF1
PRO:PR:Q9ZVF1PROSITE:PS50004ProteinModelPortal:Q9ZVF1Proteomes:UP000006548
RefSeq:NP_178263.1SMART:SM00239SMR:Q9ZVF1STRING:3702.AT2G01540.1
SUPFAM:SSF49562TAIR:AT2G01540UniGene:At.27436UniProt:Q9ZVF1
Coordinates (TAIR10) chr2:-:242297..243233
Molecular Weight (calculated) 20086.20 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.36
Length 180 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQKPLGLLT IHVKRGINLA IRDHRSSDPY IVLNVADQTL KTRVVKKNCN PVWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANID IQPYLEALKM
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD LILRLNNVEC GEIEIMLEWH EGAGCRGITS SSKGGGSSST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)