AT2G01540.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.857 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G70790.1); Has 3447 Blast hits to 2959 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 1768; Fungi - 600; Plants - 764; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:242297..243233 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 20086.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 180 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDQKPLGLLT IHVKRGINLA IRDHRSSDPY IVLNVADQTL KTRVVKKNCN PVWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANID IQPYLEALKM 101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD LILRLNNVEC GEIEIMLEWH EGAGCRGITS SSKGGGSSST |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)