AT4G15093.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : catalytic LigB subunit of aromatic ring-opening dioxygenase family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
catalytic LigB subunit of aromatic ring-opening dioxygenase family; FUNCTIONS IN: oxidoreductase activity, ferrous iron binding, zinc ion binding, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen; INVOLVED IN: oxidation reduction, cellular aromatic compound metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Extradiol aromatic ring-opening dioxygenase, DODA type (InterPro:IPR014436), Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B (InterPro:IPR004183); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8618454..8619472 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30249.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 269 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKVNQTFFL SHGSPTLSID DSLEARQFFK SWTQKVLPQK PKSILVISAH WDTKFPSVNT VLRNNTIHDF SGFPDPMYKL KYEAPGAIEL GKRVKELLMK 101: EGGMKRVDED TKRGLDHGAW VPLMLMYPEA DIPICQLSVQ SNQNGSYHYN MGKALASLKD EGVLIIGSGS ATHNLRKLDF NITDGSPVPW ALEFDHWLRD 201: SLLQGRYGDV NEWEEKAPNA KMAHPWPEHL YPLHVVMGAA GGDAKAEQIH TSWQLGTLSY SSYSFTSSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)