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AT5G18900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: P4H isoform 2 (TAIR:AT3G06300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G18900-MONOMERBRENDA:1.14.11.2EC:1.14.11.2eggNOG:ENOG410XS5J
eggNOG:KOG1591EMBL:AC068655EMBL:AY087708EMBL:AY093039
EMBL:AY128940EMBL:CP002688EnsemblPlants:AT5G18900EnsemblPlants:AT5G18900.1
entrez:832008GeneID:832008Genevisible:Q8LAN3GO:GO:0004656
GO:GO:0005506GO:GO:0005634GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0005794GO:GO:0016021GO:GO:0031418
Gramene:AT5G18900.1hmmpanther:PTHR10869hmmpanther:PTHR10869:SF64HOGENOM:HOG000096858
InParanoid:Q8LAN3InterPro:IPR003582InterPro:IPR005123InterPro:IPR006620
iPTMnet:Q8LAN3KEGG:ath:AT5G18900KO:K00472OMA:PEYMLGS
PaxDb:Q8LAN3Pfam:PF01549Pfam:PF03171Pfam:PF13640
Pfam:Q8LAN3Pfscan:PS51471Pfscan:PS51670PhylomeDB:Q8LAN3
PRIDE:Q8LAN3PRO:PR:Q8LAN3PROSITE:PS51471PROSITE:PS51670
ProteinModelPortal:Q8LAN3Proteomes:UP000006548RefSeq:NP_197391.1SMART:SM00702
SMR:Q8LAN3STRING:3702.AT5G18900.1TAIR:AT5G18900UniGene:At.23635
UniProt:Q8LAN3
Coordinates (TAIR10) chr5:-:6304409..6306166
Molecular Weight (calculated) 33062.30 Da
IEP (calculated) 7.17
GRAVY (calculated) -0.29
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MARRGLLISF FAIFSVLLQS STSLISSSSV FVNPSKVKQV SSKPRAFVYE GFLTELECDH MVSLAKASLK RSAVADNDSG ESKFSEVRTS SGTFISKGKD
101: PIVSGIEDKI STWTFLPKEN GEDIQVLRYE HGQKYDAHFD YFHDKVNIVR GGHRMATILM YLSNVTKGGE TVFPDAEIPS RRVLSENKED LSDCAKRGIA
201: VKPRKGDALL FFNLHPDAIP DPLSLHGGCP VIEGEKWSAT KWIHVDSFDR IVTPSGNCTD MNESCERWAV LGECTKNPEY MVGTTELPGY CRRSCKAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)