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AT3G62830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational
Description (TAIR10)
AUD1; FUNCTIONS IN: UDP-glucuronate decarboxylase activity, dTDP-glucose 4,6-dehydratase activity, catalytic activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, nucleotide-sugar metabolic process, D-xylose metabolic process; LOCATED IN: plasma membrane, Golgi membrane, membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-xylose synthase 4 (TAIR:AT2G47650.1); Has 44607 Blast hits to 44567 proteins in 3006 species: Archae - 852; Bacteria - 26090; Metazoa - 741; Fungi - 328; Plants - 1343; Viruses - 47; Other Eukaryotes - 15206 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G62830-MONOMERBioCyc:ARA:GQT-2809-MONOMERBioGrid:10772EC:4.1.1.35
eggNOG:COG0451eggNOG:KOG1429EMBL:AF361617EMBL:AF387788
EMBL:AL162651EMBL:AY143897EMBL:CP002686EMBL:Z49239
EnsemblPlants:AT3G62830EnsemblPlants:AT3G62830.1EnsemblPlants:AT3G62830.2entrez:825458
Gene3D:3.40.50.720GeneID:825458Genevisible:Q9LZI2GO:GO:0000139
GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0005886
GO:GO:0008460GO:GO:0016020GO:GO:0016021GO:GO:0019305
GO:GO:0032580GO:GO:0033320GO:GO:0042732GO:GO:0048040
Gramene:AT3G62830.1Gramene:AT3G62830.2gramene_pathway:4.1.1.35gramene_pathway:PWY-4821
hmmpanther:PTHR10366hmmpanther:PTHR10366:SF465HOGENOM:HOG000168004InParanoid:Q9LZI2
InterPro:IPR016040KEGG:ath:AT3G62830KO:K08678OMA:YGPRMNE
PaxDb:Q9LZI2Pfam:PF16363Pfam:Q9LZI2PhylomeDB:Q9LZI2
PIR:S58282PIR:T48072PRIDE:Q9LZI2PRO:PR:Q9LZI2
ProteinModelPortal:Q9LZI2Proteomes:UP000006548RefSeq:NP_001118893.1RefSeq:NP_191842.1
SMR:Q9LZI2STRING:3702.AT3G62830.1SUPFAM:SSF51735SwissPalm:Q9LZI2
TAIR:AT3G62830tair10-symbols:ATUXS2tair10-symbols:AUD1tair10-symbols:UXS2
TMHMM:TMhelixUniGene:At.23561UniGene:At.27002UniGene:At.63633
UniPathway:UPA00796UniProt:Q9LZI2
Coordinates (TAIR10) chr3:+:23232539..23235353
Molecular Weight (calculated) 49974.30 Da
IEP (calculated) 9.53
GRAVY (calculated) -0.33
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MASELINRRH ETDQPTADAY YPKPIKPWFT VTRPMRYMLR EQRLIFVLVG IAIATLVFTI FPRSTQSTPY SDPFSGYGIR PDESYVPAIQ AQRKPSLEYL
101: NRIGATGGKI PLGLKRKGLR VVVTGGAGFV GSHLVDRLMA RGDTVIVVDN FFTGRKENVM HHFSNPNFEM IRHDVVEPIL LEVDQIYHLA CPASPVHYKF
201: NPVKTIKTNV VGTLNMLGLA KRVGARFLLT STSEVYGDPL QHPQVETYWG NVNPIGVRSC YDEGKRTAET LTMDYHRGAN VEVRIARIFN TYGPRMCIDD
301: GRVVSNFVAQ ALRKEPLTVY GDGKQTRSFQ FVSDLVEGLM RLMEGEHVGP FNLGNPGEFT MLELAKVVQE TIDPNANIEF RPNTEDDPHK RKPDITKAKE
401: LLGWEPKVSL RQGLPLMVKD FRQRVFGDQK EGSSAAATTT KTTSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)