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AT1G63220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.483
cytosol 0.417
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G55470.2); Has 1688 Blast hits to 1587 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 191; Plants - 812; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5038eggNOG:KOG1030EMBL:AC022355EMBL:AY054623
EMBL:AY081504EMBL:AY085843EMBL:CP002684EnsemblPlants:AT1G63220
EnsemblPlants:AT1G63220.1entrez:842627EvolutionaryTrace:Q9C8S6ExpressionAtlas:Q9C8S6
Gene3D:2.60.40.150GeneID:842627Genevisible:Q9C8S6hmmpanther:PTHR10774
HOGENOM:HOG000005983InParanoid:Q9C8S6InterPro:IPR000008OMA:LTCRTQD
PaxDb:Q9C8S6PDB:1WFJPDBsum:1WFJPfam:PF00168
Pfam:Q9C8S6Pfscan:PS50004PhylomeDB:Q9C8S6PIR:H96657
PRIDE:Q9C8S6PRO:PR:Q9C8S6PROSITE:PS50004ProteinModelPortal:Q9C8S6
Proteomes:UP000006548RefSeq:NP_176511.1SMART:SM00239SMR:Q9C8S6
STRING:3702.AT1G63220.1SUPFAM:SSF49562TAIR:AT1G63220UniGene:At.24672
UniProt:Q9C8S6
Coordinates (TAIR10) chr1:+:23449017..23450244
Molecular Weight (calculated) 16266.80 Da
IEP (calculated) 3.98
GRAVY (calculated) -0.53
Length 147 amino acids
Sequence (TAIR10)
(BLAST)
001: MPHGTLEVVL VSAKGLEDAD FLNNMDPYVQ LTCRTQDQKS NVAEGMGTTP EWNETFIFTV SEGTTELKAK IFDKDVGTED DAVGEATIPL EPVFVEGSIP
101: PTAYNVVKDE EYKGEIWVAL SFKPSENRSR GMDEESYGGW KNSEASY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)