AT1G63220.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.483 cytosol 0.417 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G55470.2); Has 1688 Blast hits to 1587 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 191; Plants - 812; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:23449017..23450244 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 16266.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 3.98 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 147 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MPHGTLEVVL VSAKGLEDAD FLNNMDPYVQ LTCRTQDQKS NVAEGMGTTP EWNETFIFTV SEGTTELKAK IFDKDVGTED DAVGEATIPL EPVFVEGSIP 101: PTAYNVVKDE EYKGEIWVAL SFKPSENRSR GMDEESYGGW KNSEASY |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)