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AT1G78020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF581)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF581); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT1G22160.1); Has 525 Blast hits to 525 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 525; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1QGeggNOG:ENOG410Y1Y5EMBL:AC009243EMBL:AY063882
EMBL:AY117331EMBL:CP002684EnsemblPlants:AT1G78020EnsemblPlants:AT1G78020.1
entrez:844137GeneID:844137Gramene:AT1G78020.1hmmpanther:PTHR33059
hmmpanther:PTHR33059:SF4IntAct:Q9SGZ8InterPro:IPR007650KEGG:ath:AT1G78020
OMA:EKCTSSAPfam:PF04570PhylomeDB:Q9SGZ8PIR:E96809
Proteomes:UP000006548RefSeq:NP_565167.1STRING:3702.AT1G78020.1TAIR:AT1G78020
UniGene:At.16526UniProt:Q9SGZ8
Coordinates (TAIR10) chr1:+:29338787..29339491
Molecular Weight (calculated) 17688.00 Da
IEP (calculated) 10.26
GRAVY (calculated) -0.71
Length 162 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)