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AT1G60870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : maternal effect embryo arrest 9
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 9 (MEE9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy, pollen development; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 165 Blast hits to 92 proteins in 39 species: Archae - 0; Bacteria - 18; Metazoa - 11; Fungi - 18; Plants - 26; Viruses - 81; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZWAeggNOG:ENOG410ZBG1EMBL:AC018908EMBL:AC079675
EMBL:CP002684EnsemblPlants:AT1G60870EnsemblPlants:AT1G60870.1entrez:842379
GeneID:842379GO:GO:0005886GO:GO:0009555GO:GO:0009793
Gramene:AT1G60870.1hmmpanther:PTHR37707KEGG:ath:AT1G60870ncoils:Coil
OMA:SYKAWAAPhylomeDB:Q9C529PIR:B96634Proteomes:UP000006548
RefSeq:NP_564765.1SMR:Q9C529STRING:3702.AT1G60870.1TAIR:AT1G60870
tair10-symbols:MEE9UniGene:At.36576UniProt:Q9C529
Coordinates (TAIR10) chr1:+:22409712..22410227
Molecular Weight (calculated) 16774.70 Da
IEP (calculated) 4.43
GRAVY (calculated) -0.65
Length 147 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALIHHFTL LSDQALVDKT FDPSRIEDLM RLFEVDSYKA WAALESEQQQ ELEEAEESLR EAELELDRDM EWGMEEYRRT LEEMERMEAA ELKELEEKAE
101: TARRTGNLME KAATVAAKRH IAAAMGSAAA SMRSAWKTAA GNKVHPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)