AT3G29230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 41738 Blast hits to 14344 proteins in 280 species: Archae - 0; Bacteria - 4; Metazoa - 166; Fungi - 161; Plants - 40664; Viruses - 0; Other Eukaryotes - 743 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:11188803..11190605 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67342.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.06 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||
| Length | 600 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSSLPVRAP SWVSSRRIFE ERLQDLPKCA NLNQVKQLHA QIIRRNLHED LHIAPKLISA LSLCRQTNLA VRVFNQVQEP NVHLCNSLIR AHAQNSQPYQ 101: AFFVFSEMQR FGLFADNFTY PFLLKACSGQ SWLPVVKMMH NHIEKLGLSS DIYVPNALID CYSRCGGLGV RDAMKLFEKM SERDTVSWNS MLGGLVKAGE 201: LRDARRLFDE MPQRDLISWN TMLDGYARCR EMSKAFELFE KMPERNTVSW STMVMGYSKA GDMEMARVMF DKMPLPAKNV VTWTIIIAGY AEKGLLKEAD 301: RLVDQMVASG LKFDAAAVIS ILAACTESGL LSLGMRIHSI LKRSNLGSNA YVLNALLDMY AKCGNLKKAF DVFNDIPKKD LVSWNTMLHG LGVHGHGKEA 401: IELFSRMRRE GIRPDKVTFI AVLCSCNHAG LIDEGIDYFY SMEKVYDLVP QVEHYGCLVD LLGRVGRLKE AIKVVQTMPM EPNVVIWGAL LGACRMHNEV 501: DIAKEVLDNL VKLDPCDPGN YSLLSNIYAA AEDWEGVADI RSKMKSMGVE KPSGASSVEL EDGIHEFTVF DKSHPKSDQI YQMLGSLIEP PDPGELVAVR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)