AT2G19870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNA/rRNA methyltransferase (SpoU) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: methyltransferase activity, RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537), RNA methyltransferase TrmH, group 3 (InterPro:IPR004441), RNA 2-O ribose methyltransferase, substrate binding (InterPro:IPR013123); Has 11661 Blast hits to 11576 proteins in 2636 species: Archae - 7; Bacteria - 7686; Metazoa - 749; Fungi - 216; Plants - 206; Viruses - 3; Other Eukaryotes - 2794 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8576034..8577803 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65563.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.64 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 589 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYCNLTRSQG FPMAIRVSLQ QTTIKSCLQF SKSSYLPVKF HLNPKGSTFA HVSTGLVSSR LNSMKIRMLR NPEGVREFSS FDSQRFGKRS SSNSSRGKSG 101: LGSKAYRDKR SGGSGRSSGD SIWVKSDEKP VEERFQRGDR PSWEKRDGRN DSGSDRRSRS RGYGETRNRD SFRGRRDDRI SEVEEESKKG GGNSIWVAND 201: DKPAKEQSPR VNNRSSWDDR TRNQNSFSAR GDDRITEEAE EETMNHAPED GDGIVEEEPD NTRWSEIKNR FNRYDVRDQG RDDAAYRNWN RQESWGRKTW 301: QEATESSVPR LEGEVVYGVS PVLAALSVGR REFYALYVQE GLDLSSNNRK KKDKKGFERV LKISEKLGLN IKETSKHDLN MVADNRPHQG LVLDASPLEL 401: VKVKELDPIS SEEEKYSLWV ALDEVTDPQN LGAIIRSAYF FGATGVVVCA KNSAPLSAVV SKASAGSLEV MELRYCKNMM QFLEASAENG WRVVGGSVSP 501: KAVALNEVLP GSPTILVLGN EGTGLRPLVE RSCTDLVRIS GNMPNEVAVT ESDDAEGEGF RSFLAVESLN VSVAAGLFLH HLIGNKASA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)