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AT5G45170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30394608 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT3G48420.1); Has 352 Blast hits to 346 proteins in 109 species: Archae - 0; Bacteria - 170; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGZ5eggNOG:ENOG4111JC3EMBL:AK222127EMBL:BT011752
EMBL:CP002688EnsemblPlants:AT5G45170EnsemblPlants:AT5G45170.1entrez:834553
Gene3D:3.40.50.1000GeneID:834553GO:GO:0009507GO:GO:0009570
GO:GO:0016787Gramene:AT5G45170.1hmmpanther:PTHR18901hmmpanther:PTHR18901:SF28
HOGENOM:HOG000006280InterPro:IPR023214KEGG:ath:AT5G45170ncoils:Coil
OMA:CIRENDKPhylomeDB:Q6NMA9Proteomes:UP000006548RefSeq:NP_199330.2
SMR:Q6NMA9STRING:3702.AT5G45170.1SUPFAM:SSF56784TAIR:AT5G45170
UniGene:At.27698UniProt:Q6NMA9
Coordinates (TAIR10) chr5:-:18270555..18273129
Molecular Weight (calculated) 40743.30 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.08
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIASCSILN NLQISCTKTS IFTQYLSERS SHDTGRRNFL PFSNFPGKSQ ILGKCLRLQR FSSICLSASR EDVNPSEEFA VILEVDRVMI DTWSSNRQAF
101: NVAFQKLGLD CANWPEPVYS DLLRKGAADE EKMLLLYFNQ IGWPSSLPTS EKASFVKSVL REKKNAMDEF LISKSLPLRS GVQEFIDNAY AEKVPVAIVT
201: AYCKSGDKVA LSIVEMLGQE RLPNVKVIGD NEVEQSMYGQ LVLGKGVSSS LEEQLVKEVK KAASAEKQRI AEEVASMLKL SVDIDTTSSE RLEKIVVALR
301: AAAEHIGLPV NNCVLVAGSQ PGVSAAKMIG MPCVVMRSSL TARGEFPSAK GVMDGFGGAD LTIPKLRNKI KS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)