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AT2G17340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised conserved protein (UCP030210)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised conserved protein (UCP030210); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF89 (InterPro:IPR002791), Uncharacterised conserved protein UCP030210 (InterPro:IPR016949); BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein (UCP030210) (TAIR:AT4G35360.1); Has 357 Blast hits to 356 proteins in 130 species: Archae - 52; Bacteria - 55; Metazoa - 104; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
DNASU:816241eggNOG:ENOG410XQNKeggNOG:KOG4584EMBL:AY050977
EMBL:AY086556EMBL:AY096682EMBL:CP002685EnsemblPlants:AT2G17340
EnsemblPlants:AT2G17340.1entrez:816241EvolutionaryTrace:Q949P3GeneID:816241
Genevisible:Q949P3Gramene:AT2G17340.1hmmpanther:PTHR12280hmmpanther:PTHR12280:SF31
HOGENOM:HOG000241816InParanoid:Q949P3InterPro:IPR002791InterPro:IPR016949
KEGG:ath:AT2G17340OMA:LAFMANDPaxDb:Q949P3PDB:1XFI
PDB:2Q40PDBsum:1XFIPDBsum:2Q40Pfam:PF01937
Pfam:Q949P3PhylomeDB:Q949P3PIR:A84551PIRSF:PIRSF030210
PRIDE:Q949P3PRO:PR:Q949P3ProteinModelPortal:Q949P3Proteomes:UP000006548
RefSeq:NP_565412.1SMR:Q949P3STRING:3702.AT2G17340.1SUPFAM:SSF111321
TAIR:AT2G17340UniGene:At.21587UniGene:At.40158UniProt:Q949P3
Coordinates (TAIR10) chr2:-:7541615..7544089
Molecular Weight (calculated) 40859.90 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.16
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MESDSEMVPF PQLPMPIENN YRACTIPYRF PSDDPKKATP NEISWINVFA NSIPSFKKRA ESDITVPDAP ARAEKFAERY AGILEDLKKD PESHGGPPDG
101: ILLCRLREQV LRELGFRDIF KKVKDEENAK AISLFPQVVS LSDAIEDDGK RLENLVRGIF AGNIFDLGSA QLAEVFSRDG MSFLASCQNL VPRPWVIDDL
201: ENFQAKWINK SWKKAVIFVD NSGADIILGI LPFARELLRR GAQVVLAANE LPSINDITCT ELTEILSQLK DENGQLLGVD TSKLLIANSG NDLPVIDLSR
301: VSQELAYLSS DADLVIVEGM GRGIETNLYA QFKCDSLKIG MVKHLEVAEF LGGRLYDCVF KFNEVQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)