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AT4G35450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.932
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ankyrin repeat-containing protein 2
Curator
Summary (TAIR10)
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational
Description (TAIR10)
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:14979eggNOG:COG0666eggNOG:KOG0504EMBL:AF034387
EMBL:AF386982EMBL:AL117188EMBL:AL161587EMBL:AY081477
EMBL:AY087377EMBL:CP002687EMBL:U70425EnsemblPlants:AT4G35450
EnsemblPlants:AT4G35450.1EnsemblPlants:AT4G35450.2EnsemblPlants:AT4G35450.3entrez:829697
ExpressionAtlas:Q9SAR5Gene3D:1.25.40.20GeneID:829697Genevisible:Q9SAR5
GO:GO:0005634GO:GO:0005737GO:GO:0009707GO:GO:0030941
GO:GO:0051861hmmpanther:PTHR24193hmmpanther:PTHR24193:SF88HOGENOM:HOG000240562
InParanoid:Q9SAR5IntAct:Q9SAR5InterPro:IPR002110InterPro:IPR020683
PaxDb:Q9SAR5PDB:4TUMPDBsum:4TUMPfam:PF12796
Pfam:Q9SAR5Pfscan:PS50088Pfscan:PS50297PhylomeDB:Q9SAR5
PIR:T41742PRIDE:Q9SAR5PRO:PR:Q9SAR5PROSITE:PS50088
PROSITE:PS50297ProteinModelPortal:Q9SAR5Proteomes:UP000006548RefSeq:NP_195270.1
RefSeq:NP_849497.1RefSeq:NP_849498.1SMART:SM00248SMR:Q9SAR5
STRING:3702.AT4G35450.5SUPFAM:SSF48403TAIR:AT4G35450tair10-symbols:AFT
tair10-symbols:AKR2tair10-symbols:AKR2AUniGene:At.24072UniProt:B9DFM6
UniProt:Q9SAR5
Coordinates (TAIR10) chr4:+:16839862..16841759
Molecular Weight (calculated) 36986.30 Da
IEP (calculated) 4.21
GRAVY (calculated) -0.53
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNSEKNPL LSDEKPKSTE ENKSSKPESA SGSSTSSAMP GLNFNAFDFS NMASILNDPS IREMAEQIAK DPAFNQLAEQ LQRSIPNAGQ EGGFPNFDPQ
101: QYVNTMQQVM HNPEFKTMAE KLGTALVQDP QMSPFLDAFS NPETAEHFTE RMARMKEDPE LKPILDEIDA GGPSAMMKYW NDPEVLKKLG EAMGMPVAGL
201: PDQTVSAEPE VAEEGEEEES IVHQTASLGD VEGLKAALAS GGNKDEEDSE GRTALHFACG YGELKCAQVL IDAGASVNAV DKNKNTPLHY AAGYGRKECV
301: SLLLENGAAV TLQNLDEKTP IDVAKLNSQL EVVKLLEKDA FL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)