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AT1G11860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:22968828 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:21296373 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid
  • PMID:18385124 (2008): mitochondrion
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycine cleavage T-protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycine cleavage T-protein family; FUNCTIONS IN: aminomethyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycine cleavage system T protein (InterPro:IPR006223), Glycine cleavage T-protein, N-terminal (InterPro:IPR006222), Glycine cleavage T-protein, C-terminal barrel (InterPro:IPR013977); BEST Arabidopsis thaliana protein match is: Glycine cleavage T-protein family (TAIR:AT1G60990.3); Has 18524 Blast hits to 18520 proteins in 1978 species: Archae - 139; Bacteria - 5685; Metazoa - 432; Fungi - 162; Plants - 109; Viruses - 0; Other Eukaryotes - 11997 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G11860-MONOMERBioCyc:ARA:GQT-2332-MONOMERBioCyc:ARA:GQT-2333-MONOMERBioGrid:22973
EC:2.1.2.10eggNOG:COG0404eggNOG:KOG2770EMBL:AC002131
EMBL:AY125509EMBL:BT006361EMBL:CP002684EMBL:Z26545
EnsemblPlants:AT1G11860EnsemblPlants:AT1G11860.1EnsemblPlants:AT1G11860.2EnsemblPlants:AT1G11860.3
entrez:837733Gene3D:2.40.30.110Gene3D:3.30.1360.120GeneID:837733
Genevisible:O65396GO:GO:0004047GO:GO:0005739GO:GO:0006546
GO:GO:0008483GO:GO:0009507GO:GO:0009534GO:GO:0009570
GO:GO:0009941GO:GO:0016020GO:GO:0022626GO:GO:0046686
GO:GO:0048046Gramene:AT1G11860.1Gramene:AT1G11860.2Gramene:AT1G11860.3
gramene_pathway:2.1.2.10gramene_pathway:GLYCLEAV-PWYhmmpanther:PTHR13847hmmpanther:PTHR13847:SF212
HOGENOM:HOG000239380InParanoid:O65396InterPro:IPR006222InterPro:IPR006223
InterPro:IPR013977InterPro:IPR027266InterPro:IPR028896InterPro:IPR029043
iPTMnet:O65396KEGG:00260+2.1.2.10KEGG:00670+2.1.2.10KEGG:ath:AT1G11860
KO:K00605OMA:LGWLVHLPaxDb:O65396Pfam:O65396
Pfam:PF01571Pfam:PF08669PhylomeDB:O65396PIR:H86252
PIRSF:PIRSF006487PRIDE:O65396PRO:PR:O65396ProteinModelPortal:O65396
Proteomes:UP000006548Reactome:R-ATH-6783984RefSeq:NP_001184969.1RefSeq:NP_172650.1
RefSeq:NP_849646.1SMR:O65396STRING:3702.AT1G11860.1SUPFAM:SSF101790
SUPFAM:SSF103025SWISS-2DPAGE:O65396TAIR:AT1G11860TIGRfam:TIGR00528
TIGRFAMs:TIGR00528UniGene:At.47506UniProt:O65396
Coordinates (TAIR10) chr1:+:4001801..4003245
Molecular Weight (calculated) 44447.30 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.26
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGGSLWQLG QSITRRLAQS DKKVVSRRYF ASEADLKKTA LYDFHVAHGG KMVPFAGWSM PIQYKDSIMD STVNCRENGS LFDVAHMCGL SLKGKDCVPF
101: LETLVVADVA GLAPGTGSLT VFTNEKGGAI DDSVITKVTD EHIYLVVNAG CRDKDLAHIE EHMKAFKSKG GDVSWHIHDE RSLLALQGPL AAPVLQHLTK
201: EDLSKLYFGN FQILDINGST CFLTRTGYTG EDGFEISVPD EHAVDLAKAI LEKSEGKVRL TGLGARDSLR LEAGLCLYGN DMEQHISPVE AGLTWAIGKR
301: RRAEGGFLGA DVILQQLKDG PTIRRVGFFS SGPPARSHSE VHDESGNKIG EITSGGFSPN LKKNIAMGYV KSGQHKTGTK VKILVRGKPY EGSITKMPFV
401: ATKYYKPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)