AT1G77122.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Uncharacterised protein family UPF0090 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Uncharacterised protein family UPF0090; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0090 (InterPro:IPR003728); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family UPF0090 (TAIR:AT1G69210.1); Has 3296 Blast hits to 1357 proteins in 179 species: Archae - 2; Bacteria - 148; Metazoa - 1652; Fungi - 253; Plants - 200; Viruses - 109; Other Eukaryotes - 932 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28977427..28978674 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36878.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.37 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||
| Length | 323 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLLFCFRPN QTCRGISVLP AFSISNLSAV NRFRSTTSLR FGFPATPFRR TPNFTFKTHA KRKNKTSTFE PKPNKVEELI IEEEEEEEEE EEIVLPEEIQ 101: ENQDELLLDD EYDEDDDDDF EFDESEEELY AGDGGGGGGI KLAGTLWDKV ALALAVKVCE SFDGDLGIYA FKTLPNSTIQ VRIERLTNKF GSPTMEDIEA 201: FSTIYRAKLA EAELAKSIPD NISLEVSSPG VERVVRIPQD LDRYKDRPMY VRYTNEDTET EGDGIFRLVS FDVEAKICIW GIADIRVNRE KAGKGRPLSK 301: KQREWRLETA FESLRLVRLH SEC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)