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AT3G09150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator
Summary (TAIR10)
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational
Description (TAIR10)
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 403 Blast hits to 403 proteins in 61 species: Archae - 0; Bacteria - 184; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG77eggNOG:ENOG41102EMEMBL:CP002686EnsemblPlants:AT3G09150
EnsemblPlants:AT3G09150.1EnsemblPlants:AT3G09150.3entrez:820069ExpressionAtlas:F4IZU7
GeneID:820069GO:GO:0010024GO:GO:0016636GO:GO:0050897
Gramene:AT3G09150.3hmmpanther:PTHR34557hmmpanther:PTHR34557:SF1InterPro:IPR009249
PaxDb:F4IZU7Pfam:PF05996PRIDE:F4IZU7ProteinModelPortal:F4IZU7
Proteomes:UP000006548RefSeq:NP_974264.1SMR:F4IZU7STRING:3702.AT3G09150.2
TAIR:AT3G09150tair10-symbols:ATHY2tair10-symbols:GUN3tair10-symbols:HY2
UniGene:At.10486UniProt:F4IZU7
Coordinates (TAIR10) chr3:+:2803665..2805333
Molecular Weight (calculated) 37874.40 Da
IEP (calculated) 8.40
GRAVY (calculated) -0.39
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSMEFGFS IGSCFKAPNP PVLISASPNK INFTLRRRKK RFLLRVSAVS YKEFAESALE ETRKRIVLEP SHLQYSSMTG LDGKTELQML AFKSSKIRLL
101: RSMAIENETM QVFDFAGFME PEYDTPIFCA NFFTSTNVNI VVLDLNPLHQ LTDQTDYQDK YYNKIMSIYH KYAETFPWGG KLTGESIKFF SPLVMWTRFS
201: SSKEKHKALF SAFLEYYQAW LEMTIQVREE MEPSHVRANC EAQHKYLTWR AQKDPGHGLL KRLVGEAKAK ELLRDFLFNG VDELGTKTFI DYFPEYQTED
301: GTVSDKRSII GKSYETRPWD LTGQFIG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)