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AT5G20000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AAA-type ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AAA-type ATPase family protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 6A (TAIR:AT5G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17398eggNOG:COG1222eggNOG:KOG0728EMBL:AF296836
EMBL:AK226206EMBL:AY039965EMBL:AY079403EMBL:AY087503
EMBL:CP002688EnsemblPlants:AT5G20000EnsemblPlants:AT5G20000.1entrez:832122
Gene3D:3.40.50.300GeneID:832122Genevisible:Q94BQ2GO:GO:0000502
GO:GO:0005524GO:GO:0005634GO:GO:0005737GO:GO:0016787
GO:GO:0030163Gramene:AT5G20000.1hmmpanther:PTHR23073hmmpanther:PTHR23073:SF12
HOGENOM:HOG000225143InParanoid:Q94BQ2IntAct:Q94BQ2InterPro:IPR003593
InterPro:IPR003959InterPro:IPR003960InterPro:IPR005937InterPro:IPR027417
KEGG:ath:AT5G20000KO:K03066ncoils:CoilOMA:REPAVIF
PaxDb:Q94BQ2Pfam:PF00004Pfam:Q94BQ2PhylomeDB:Q94BQ2
PRIDE:Q94BQ2PRO:PR:Q94BQ2PROSITE:PS00674ProteinModelPortal:Q94BQ2
Proteomes:UP000006548Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425
Reactome:R-ATH-5632684Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168
RefSeq:NP_197500.1scanprosite:PS00674SMART:SM00382SMR:Q94BQ2
STRING:3702.AT5G20000.1SUPFAM:SSF52540TAIR:AT5G20000TIGRfam:TIGR01242
TIGRFAMs:TIGR01242UniGene:At.51251UniProt:Q94BQ2
Coordinates (TAIR10) chr5:+:6756915..6759550
Molecular Weight (calculated) 47159.70 Da
IEP (calculated) 8.96
GRAVY (calculated) -0.36
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVGVEARP PVTAMEETCN VKGAAAKQGE GLNKYYLQHL DELQRLQREK SYNLNRLEAQ RNELNSRVRM LREELQLLQE PGSYVGEVVK VMGKNKVLVK
101: VHPEGKYVVD IDKSIDITKL TPSTRVALRN DSYVLHLVLP SKVDPLVNLM KVEKVPDSTY DMIGGLDQQI KEIKEVIELP IKHPELFESL GIAQPKGVLL
201: YGPPGTGKTL LARAVAHHTD CTFIRVSGSE LVQKYIGEGS RMVRELFVMA REHAPSIIFM DEIDSIGSAR MESGSGNGDS EVQRTMLELL NQLDGFEASN
301: KIKVLMATNR IDILDQALLR PGRIDRKIEF PNPNEESRFD ILKIHSRKMN LMRGIDLKKI AEKMNGASGA ELKAVCTEAG MFALRERRVH VTQEDFEMAV
401: AKVMKKDTEK NMSLRKLWK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)