AT2G38185.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.928 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G38220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16000155..16002699 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49060.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.41 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||
| Length | 441 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSAPSPSSL DFELSPPVLV TMTSTSSSAS DNVEGADDDA NTHGIFNWRD FSSCWRVSES NLYCFSLALL IWFFASFILI ENLYGPKNVW LGPSSSILVE 101: PSSIFVKSIK VKVLDYSEPG LQLYGFYRTP ALDCFVNWSE SRVLSISHES YKGWPYYLNS GSLLNITYTV KPQGSAVQLV VDEGHQGVPQ SVLNDPAYRY 201: NVWSWNLIEG SGMIQLEIRK SSSYYLAVAN LKSKDVEVEL NIDVKAVLYD TKQSFYNCNF SNGECTFNAM SLVGNSVVVT SPAASQGVSI EDEWYIRFSY 301: QPREIAYVIG TGVVICFMLV AIQFCNRFQC SGGEGHLTED DSARTRLLAD KDDDGSSMGS CDDSYANDDA DLEEFMGNDG EASNRSRRLC AICFDVPRDC 401: FFLPCGHSVS CYECGTTMQE ADGSCPICRR KMKKVKRIYT V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)