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AT4G20310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.729
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidase M50 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase M50 family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M50, mammalian sterol-regulatory element binding protein (InterPro:IPR001193), Peptidase M50 (InterPro:IPR008915); Has 349 Blast hits to 349 proteins in 137 species: Archae - 138; Bacteria - 13; Metazoa - 102; Fungi - 6; Plants - 62; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0750eggNOG:KOG2921EMBL:CP002687EnsemblPlants:AT4G20310
EnsemblPlants:AT4G20310.1entrez:827778ExpressionAtlas:F4JUU6GeneID:827778
GO:GO:0004222GO:GO:0016021Gramene:AT4G20310.1hmmpanther:PTHR13325
hmmpanther:PTHR13325:SF3InterPro:IPR001193InterPro:IPR008915MEROPS:M50.009
PANTHER:PTHR13325PaxDb:F4JUU6Pfam:PF02163PRIDE:F4JUU6
PRINTS:PR01000ProteinModelPortal:F4JUU6Proteomes:UP000006548RefSeq:NP_193764.3
SMR:F4JUU6STRING:3702.AT4G20310.2TAIR:AT4G20310TMHMM:TMhelix
UniGene:At.45338UniProt:F4JUU6
Coordinates (TAIR10) chr4:+:10961639..10963283
Molecular Weight (calculated) 43363.90 Da
IEP (calculated) 7.79
GRAVY (calculated) 0.33
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MEISGRRMRR FRMRFRRDHL TGGENIENEA SCCYCDLKIS NFNEPIFRLG RRFSGVLKVW FSIGLGFGVA SLILVTVFLL LQFHSNPLFS NRLTSAVFGF
101: SPSTRVSLSG IAYVLVSTVI TVSVHELGHA LAAASEGIQM EYIAVFIAAI FPGGLVAFDN DVLQSLPSFN ALRIYCAGIW HNAVFCALCV FALFLLPVML
201: SPFYKHGESL TVVDVPSVSP LFGYLSPGDV IVSLDGIQVH KPSEWLELAA ILDKENSKTS NGSLYLGGSR RFHHGKGYCV PISLIEEGYK GKMVENQFVC
301: PGDLTAFRTM PCSNAAIREV SVCLDAKDIV KLQKCGDGWV TTSDTDNQSD CVCPQAYCGQ RSLIKEPRHR IALDLVWISI PQIVLARLFL SVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)