AT5G52580.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RabGAP/TBC domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RabGAP/TBC domain-containing protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195), Protein of unknown function DUF3548 (InterPro:IPR021935); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G28550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:21338052..21342848 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77674.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.35 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||
| Length | 673 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMEATELQD LSDDADYAAS QQQGSASMMR SDSGKRSLQS EHEDAVLIYL KDNVAIHPTQ FASERISGRL KLTKQDSVLF LSWIPYKGQT SNAKLSEKDR 101: SLYTITAVPF TEVRSIRRHT PALGWQYVIV VLSSGLAFPP LYFYNGGVRE FLAMVKQHVF LARSSEDQNV FIVNDFQSPL QRTLSSLELP SSLPVASGQS 201: VYPLDGGSSS ENQRRTSSDV GNRVSSVSQS GFRKQKSHDP TRDLSIHLLE KFSLVTKFAR DTTTQLFSEN NGFGSIDKRW NNQPVHSYPE KLSNIAEEKH 301: HEIRHSYSEN DLLKDDEISY IDVPADPLEF DKLSLMWGKP RQPPMGHKEF TALLDSEGRV VESKALRERV FYGGIEHQLR REVWPFLLGY YAYDSTYAER 401: EYLRSVKRME YATLKQQWQS ISPEQAKRFT KYRERKGLID KDVVRTDRAF EYYEGDDNLH VNSMRDILLT YSFYNFDLGY CQGMSDYLSP ILFVMEDESE 501: SFWCFVALME RLGPNFNRDQ NGMHTQLFAL SKLVELLDSP LHNYFKENDC LNYFFCFRWI LIQFKREFEY EKTMQLWEVM WTHYLSEHFH LYVCVAVLKR 601: CRSKIMGEQM DFDTLLKFIN ELSGHIDLDS TVRDAEALCI EAGENGAASI PPGTPPSLPL DDGTLYPQED DVL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)