AT1G09870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : histidine acid phosphatase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
histidine acid phosphatase family protein; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Histidine acid phosphatase, eukaryotic (InterPro:IPR016274); Has 765 Blast hits to 755 proteins in 231 species: Archae - 0; Bacteria - 126; Metazoa - 192; Fungi - 356; Plants - 52; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:3205817..3208444 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54857.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||
| Length | 487 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATKTVWIIL LCLFVVSQAD QGFDVRHHLS TVTRYSTSKD VTQNLIEGSN VPSECTPIHL NLVARHGTRS PTKKRLRELE SLAGRFKELV RDAEARKLPS 101: DKIPGWLGQW KSPWEGKVKG GELIRQGEDE LYQLGIRVRE RFPSLFEEDY HPDVYTIRAT QIPRASASAV AFGMGLFSEK GNLGPGRNRA FAVTSENRAS 201: DTKLRFFECC QNYKSYRKAK EPAVDKLKEP VLNKITASVA KRYDLKFTKQ DISSLWFLCK QEASLLNVTN QSCELFTPSE VALLEWTDDL EVFLLKGYGN 301: SLNYKMGVPL LEDVLHSMEE AIKAREEKLP PGSYEKARLR FAHAETIVPF SCLLGLFLDG SEFEKIQKEK PLELPPQPPK TRDFRGSTMA PFGGNNILVL 401: YSCPAESSPK YFVQVLHNEH PIAVPGCDGK DFCPLEDFKA KVVTPHLKHA FDNLCNADLN DLKQKPASSK LSILSSWLFG SSHDTEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)