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AT1G21080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAJ heat shock N-terminal domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G76700.1); Has 22938 Blast hits to 22804 proteins in 3197 species: Archae - 169; Bacteria - 9211; Metazoa - 3964; Fungi - 2251; Plants - 2330; Viruses - 17; Other Eukaryotes - 4996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2214eggNOG:KOG0691EMBL:AC012190EMBL:AY046050
EMBL:CP002684EnsemblPlants:AT1G21080EnsemblPlants:AT1G21080.1entrez:838704
ExpressionAtlas:Q9LPU3Gene3D:1.10.287.110GeneID:838704Gramene:AT1G21080.1
hmmpanther:PTHR24078hmmpanther:PTHR24078:SF219HOGENOM:HOG000186929InterPro:IPR001623
InterPro:IPR018253InterPro:IPR026894Pfam:PF00226Pfam:PF14308
Pfscan:PS50076PhylomeDB:Q9LPU3PIR:H86343PRINTS:PR00625
PROSITE:PS00636PROSITE:PS50076Proteomes:UP000006548RefSeq:NP_564134.1
scanprosite:PS00636SMART:SM00271SMR:Q9LPU3STRING:3702.AT1G21080.3
SUPFAM:SSF46565TAIR:AT1G21080UniGene:At.24159UniGene:At.67407
UniProt:Q9LPU3
Coordinates (TAIR10) chr1:-:7378822..7382275
Molecular Weight (calculated) 43926.10 Da
IEP (calculated) 6.14
GRAVY (calculated) -0.60
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKETEFYDV LGVSPTATEA EIKKAYYIKA RQVHPDKNPN DPQAAHNFQV LGEAYQVLSD PGQRQAYDTS GKSGISTEII DPAAIFAMLF GSELFEEYIG
101: QLAMASMASL DIFTEGDQID TKKIIEKMRA VQKEREDKLA QILKDRLNLY MTNKDEFTSN AEAEVTRLSN AAYGVEMLNT IGYIYVRQAA KELGKKAIYL
201: GVPFVAEWFR TKGHFIKSQV TAATGAYALF QLQEEMKRQL SAEGNYTEKE LEEYMKTHKK VMIDSLWKLN VADIESTISR VCEQVLQDPT AKREELRARA
301: KGLKTLGKIF QKNKIASESD PLVRAELHKL NGNGQEHDHS STSPKSDEAS RSTVGPQEPQ SPYVEAPKLG EEQINYYFPR PAPPPGAQRH S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)