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AT4G27650.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.655
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic release factor 1 (eRF1) family protein
Curator
Summary (TAIR10)
Encodes Arabidopsis homolog of Drosophila pelota protein.
Computational
Description (TAIR10)
PELOTA (PEL1); FUNCTIONS IN: translation release factor activity; INVOLVED IN: meiosis, translational termination, translation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Probable translation factor pelota (InterPro:IPR004405); BEST Arabidopsis thaliana protein match is: Eukaryotic release factor 1 (eRF1) family protein (TAIR:AT3G58390.1); Has 776 Blast hits to 774 proteins in 323 species: Archae - 255; Bacteria - 0; Metazoa - 140; Fungi - 159; Plants - 51; Viruses - 1; Other Eukaryotes - 170 (source: NCBI BLink).
Protein Annotations
EC:3.1.-.-eggNOG:COG1537eggNOG:KOG2869EMBL:AF069497
EMBL:AF325048EMBL:AL035602EMBL:AL161571EMBL:AY074298
EMBL:AY096569EMBL:CP002687EnsemblPlants:AT4G27650EnsemblPlants:AT4G27650.1
entrez:828876Gene3D:3.30.1330.30GeneID:828876Genevisible:Q9ZT87
GO:GO:0004519GO:GO:0005634GO:GO:0005737GO:GO:0046872
GO:GO:0070481GO:GO:0070966GO:GO:0071025hmmpanther:PTHR10853
HOGENOM:HOG000184162InParanoid:Q9ZT87InterPro:IPR004405InterPro:IPR005140
InterPro:IPR005141InterPro:IPR005142InterPro:IPR029064KEGG:ath:AT4G27650
KO:K06965OMA:AFYGKKHPANTHER:PTHR10853PaxDb:Q9ZT87
Pfam:PF03463Pfam:PF03464Pfam:PF03465Pfam:Q9ZT87
PhylomeDB:Q9ZT87PIR:T05870PRIDE:Q9ZT87PRO:PR:Q9ZT87
ProteinModelPortal:Q9ZT87Proteomes:UP000006548RefSeq:NP_194495.3SMART:SM01194
SMR:Q9ZT87STRING:3702.AT4G27650.1SUPFAM:SSF159065SUPFAM:SSF53137
SUPFAM:SSF55315TAIR:AT4G27650tair10-symbols:PEL1TIGRfam:TIGR00111
TIGRFAMs:TIGR00111UniGene:At.2803UniProt:Q9ZT87
Coordinates (TAIR10) chr4:-:13803459..13807556
Molecular Weight (calculated) 42521.50 Da
IEP (calculated) 8.25
GRAVY (calculated) -0.22
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIVRRDFVR NGPGSVKMVA EDSDDLWYAY NLIAVGDSVM AVTFRKVQRE IPGGGRDSER VKLKLEVQVE EVDYDKDGSV LRIRGKNILE NEHVKIGAFH
101: TLELELKRPF VLRKEMWDSM ALDTLKQASD PAASADLAVV LMQEGLAQIF LVGRSVTSSR ARIETSIPRK HGPAIAGYES ALKKFFENVL QAFVKHVDFS
201: VVRCAVVASP GFTKDQFHRH LLLEAERRQL RPIIENKSRI ILVHTNSGYR HSLGEVLHAP NVMNMIKDTK AAKEVKALND FHNMLSTEPD RACYGPKHVE
301: VANERMAIQT LLITDELFRN SDVKTRKKYV NLVESVKDSG GDAFIFSAMH VSGEQLAQLT GIAALLRFPL PELEDIEM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)