AT4G02120.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 0.595 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : CTP synthase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT3G12670.1); Has 10891 Blast hits to 10859 proteins in 2938 species: Archae - 237; Bacteria - 5545; Metazoa - 255; Fungi - 228; Plants - 170; Viruses - 0; Other Eukaryotes - 4456 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:940873..944097 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 60960.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 556 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKYVLVTGGV VSGLGKGVTA SSIGVVLKAC GLGVTSIKID PYLNTDAGTM SPFEHGEVFV LDDGGEVDLD LGNYERFLDV TLTKDNNITT GKIYQSVLDK 101: ERKGDYLGKT VQVVPHITDA IKDWIESVSL IPVDGKEGQA DVCVIELGGT VGDIESMPFI EALRQLSFSV GPDNFCLIHV SLIPVLGVVG EQKTKPTQHT 201: VRELRALGLT PHFLACRSAQ PLLESTKAKL SQFCHVAAAN ILNIHDVPNI WHVPLLLRNQ NAHHSILKQL NLTNVATAPD LDSWNKMAET FDNLTNHVQI 301: AMVGKYIGLT DSYLSVVKAL LHACIACSLK PHIEWIAASD LEDESEKSTP EAHAAAWKIL KSAECILVPG GFGDRGVSGM VLAAKYAREN KIPYLGICLG 401: MQIAVIEFAR SVLGLERANS TEFDAQTSDP VVIFMPEGSR THMGSTMRLG SRRTHLHNRD SLTSKLYGQV SYVDERHRHR YEVNPEVAQA LEEAGLRFVG 501: KDDTGKRVEV IEFQDHPFYV GVQFHPEFKS RPTRPSPLFL GFILAARKLL QAHLSN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)