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AT4G02120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.595
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CTP synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT3G12670.1); Has 10891 Blast hits to 10859 proteins in 2938 species: Archae - 237; Bacteria - 5545; Metazoa - 255; Fungi - 228; Plants - 170; Viruses - 0; Other Eukaryotes - 4456 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G02120-MONOMEREC:6.3.4.2eggNOG:COG0504eggNOG:KOG2387
EMBL:AY140051EMBL:CP002687EnsemblPlants:AT4G02120EnsemblPlants:AT4G02120.1
entrez:828137Gene3D:3.40.50.300Gene3D:3.40.50.880GeneID:828137
GO:GO:0003883GO:GO:0005524GO:GO:0006541GO:GO:0044210
Gramene:AT4G02120.1gramene_pathway:6.3.4.2gramene_pathway:PWY-5687HAMAP:MF_01227
hmmpanther:PTHR11550hmmpanther:PTHR11550:SF7HOGENOM:HOG000077514InterPro:IPR004468
InterPro:IPR017456InterPro:IPR017926InterPro:IPR027417InterPro:IPR029062
KEGG:00240+6.3.4.2KEGG:ath:AT4G02120KO:K01937MEROPS:C26.964
OMA:IEWIAASPANTHER:PTHR11550Pfam:PF00117Pfam:PF06418
Pfscan:PS51273PhylomeDB:Q8L6Z9PROSITE:PS51273Proteomes:UP000006548
Reactome:R-ATH-499943RefSeq:NP_192121.2SMR:Q8L6Z9STRING:3702.AT4G02120.1
SUPFAM:SSF52317SUPFAM:SSF52540TAIR:AT4G02120TIGRfam:TIGR00337
TIGRFAMs:TIGR00337UniGene:At.34332UniPathway:UPA00159UniProt:Q8L6Z9
Coordinates (TAIR10) chr4:+:940873..944097
Molecular Weight (calculated) 60960.40 Da
IEP (calculated) 6.58
GRAVY (calculated) -0.05
Length 556 amino acids
Sequence (TAIR10)
(BLAST)
001: MKYVLVTGGV VSGLGKGVTA SSIGVVLKAC GLGVTSIKID PYLNTDAGTM SPFEHGEVFV LDDGGEVDLD LGNYERFLDV TLTKDNNITT GKIYQSVLDK
101: ERKGDYLGKT VQVVPHITDA IKDWIESVSL IPVDGKEGQA DVCVIELGGT VGDIESMPFI EALRQLSFSV GPDNFCLIHV SLIPVLGVVG EQKTKPTQHT
201: VRELRALGLT PHFLACRSAQ PLLESTKAKL SQFCHVAAAN ILNIHDVPNI WHVPLLLRNQ NAHHSILKQL NLTNVATAPD LDSWNKMAET FDNLTNHVQI
301: AMVGKYIGLT DSYLSVVKAL LHACIACSLK PHIEWIAASD LEDESEKSTP EAHAAAWKIL KSAECILVPG GFGDRGVSGM VLAAKYAREN KIPYLGICLG
401: MQIAVIEFAR SVLGLERANS TEFDAQTSDP VVIFMPEGSR THMGSTMRLG SRRTHLHNRD SLTSKLYGQV SYVDERHRHR YEVNPEVAQA LEEAGLRFVG
501: KDDTGKRVEV IEFQDHPFYV GVQFHPEFKS RPTRPSPLFL GFILAARKLL QAHLSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)