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AT5G47800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G67900.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDZUeggNOG:ENOG410YFNPEMBL:AB016886EMBL:AK228510
EMBL:BT005761EMBL:BT006083EMBL:CP002688EnsemblPlants:AT5G47800
EnsemblPlants:AT5G47800.1entrez:834831GeneID:834831Genevisible:Q9FIK1
GO:GO:0016567Gramene:AT5G47800.1hmmpanther:PTHR32370hmmpanther:PTHR32370:SF19
HOGENOM:HOG000239180InParanoid:Q9FIK1InterPro:IPR000210InterPro:IPR011333
InterPro:IPR027356iPTMnet:Q9FIK1KEGG:ath:AT5G47800OMA:AWRISGW
PaxDb:Q9FIK1Pfam:PF00651Pfam:PF03000Pfam:Q9FIK1
Pfscan:PS50097Pfscan:PS51649PhylomeDB:Q9FIK1PRO:PR:Q9FIK1
PROSITE:PS50097PROSITE:PS51649ProteinModelPortal:Q9FIK1Proteomes:UP000006548
RefSeq:NP_199591.1STRING:3702.AT5G47800.1SUPFAM:SSF54695TAIR:AT5G47800
UniGene:At.29878UniPathway:UPA00143UniProt:Q9FIK1
Coordinates (TAIR10) chr5:+:19354171..19356126
Molecular Weight (calculated) 63305.90 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.36
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFMKIGTKP DTFYTQEASR ILITDTPNDL VIRINNTTYH LHRSCLVPKC GLLRRLCTDL EESDTVTIEL NDIPGGADAF ELCAKFCYDI TINLSAHNLV
101: NALCASKFLR MSDSVDKGNL LPKLEAFFHS CILQGWKDSI VTLQSTTKLP EWCENLGIVR KCIDSIVEKI LTPTSEVSWS HTYTRPGYAK RQHHSVPRDW
201: WTEDISDLDL DLFRCVITAA RSTFTLPPQL IGEALHVYTC RWLPYFKSNS HSGFSVKENE AALERHRRLV NTVVNMIPAD KGSVSEGFLL RLVSIASYVR
301: ASLTTKTELI RKSSLQLEEA TLEDLLLPSH SSSHLHRYDT DLVATVLESF LMLWRRQSSA HLSSNNTQLL HSIRKVAKLI DSYLQAVAQD VHMPVSKFVS
401: LSEAVPDIAR QSHDRLYKAI NIFLKVHPEI SKEEKKRLCR SLDCQKLSAQ VRAHAVKNER MPLRTVVQAL FFDQESGSKG ASSRSESQEL FTRGKETPTD
501: EHSMMHKLHL GPASTGKAKN VLEEGCKRGE EKTRSSTDPK KIVWKGTGSE HKHHISRDR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)