AT3G05180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54790.3); Has 3072 Blast hits to 3027 proteins in 86 species: Archae - 0; Bacteria - 41; Metazoa - 0; Fungi - 5; Plants - 3025; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1468599..1470529 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42346.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.98 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 379 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METLFHTLLR LLLFVAISHT LSPLAGSFRI SNDFPAVFNF GDSNSDTGEL SSGLGFLPQP SYEITFFRSP TSGRFCNGRL IVDFLMEAID RPYLRPYLDS 101: ISRQTYRRGC NFAAAASTIQ KANAASYSPF GFGVQVSQFI TFKSKVLQLI QQDEELQRYL PSEYFFSNGL YMFDIGQNDI AGAFYTKTVD QVLALVPIIL 201: DIFQDGIKRL YAEGARNYWI HNTGPLGCLA QVVSIFGEDK SKLDEFGCVS DHNQAAKLFN LQLHGLFKKL PQQYPNSRFT YVDIFSIKSD LILNHSKYGF 301: DHSIMVCCGT GGPPLNYDDQ VGCGKTARSN GTIITAKPCY DSSKYVNWDG IHYTEAANRF VALHILTGKY SETASSLNL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)