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AT5G15780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); Has 85252 Blast hits to 38354 proteins in 1825 species: Archae - 258; Bacteria - 17925; Metazoa - 33727; Fungi - 8101; Plants - 11894; Viruses - 2873; Other Eukaryotes - 10474 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYVXeggNOG:ENOG410ZD9YEMBL:AL391144EMBL:BT002428
EMBL:BT015871EMBL:CP002688EnsemblPlants:AT5G15780EnsemblPlants:AT5G15780.1
entrez:831434GeneID:831434GO:GO:0016021Gramene:AT5G15780.1
hmmpanther:PTHR33210hmmpanther:PTHR33210:SF1KEGG:ath:AT5G15780OMA:IKGCSVK
Pfam:PF01190PIR:T51407Proteomes:UP000006548RefSeq:NP_197082.1
TAIR:AT5G15780TMHMM:TMhelixUniGene:At.10161UniProt:Q9LFU8
Coordinates (TAIR10) chr5:-:5144898..5146297
Molecular Weight (calculated) 42980.10 Da
IEP (calculated) 10.51
GRAVY (calculated) -0.13
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MERITTLWFW FSLMIFLGIS INGGLSQGQQ HVMKKTRSSA VVVGTVYCDT CFNGAFSKSP NHLISGALVA VECIDENSKP SFRQEVKTDK RGEFKVKLPF
101: SVSKHVKKIK RCSVKLLSSS QPYCSIASSA TSSSLKRLKS NHHGENTRVF SAGFFTFRPE NQPEICSQKP INLRGSKPLL PDPSFPPPLQ DPPNPSPLPN
201: LPIVPPLPNL PVPKLPVPDL PLPLVPPLLP PGPQKSASLH NKKSDSLKDK KTEALKPNFF FPPNPLNPPS IIPPNPLIPS IPTPTLPPNP LIPSPPSLPP
301: IPLIPTPPTL PTIPLLPTPP TPTLPPIPTI PTLPPLPVLP PVPIVNPPSL PPPPPSFPVP LPPVPGLPGI PPVPLIPGIP PAPLIPGIPP LSPSFSSHHQ
401: P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)