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AT5G20630.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24393051 (2015): extracellular region
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22363647 (2012): extracellular region apoplast
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:20061580 (2010): plastid
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : germin 3
Curator
Summary (TAIR10)
Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation.
Computational
Description (TAIR10)
germin 3 (GER3); INVOLVED IN: response to cold, peptidyl-cysteine S-nitrosylation; LOCATED IN: extracellular matrix, apoplast, cell wall, nucleus, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 1 (TAIR:AT1G72610.1); Has 1486 Blast hits to 1484 proteins in 101 species: Archae - 0; Bacteria - 34; Metazoa - 0; Fungi - 23; Plants - 1414; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
Allergome:779BioGrid:17460eggNOG:ENOG410II9ZeggNOG:ENOG410YB6M
EMBL:AF296832EMBL:AJ132237EMBL:AY039516EMBL:AY055786
EMBL:CP002688EMBL:D89374EMBL:U75188EMBL:U75193
EMBL:U75195EMBL:U75203EMBL:U75205EMBL:Y12673
EnsemblPlants:AT5G20630EnsemblPlants:AT5G20630.1entrez:832185Gene3D:2.60.120.10
GeneID:832185Genevisible:P94072GO:GO:0005618GO:GO:0005634
GO:GO:0009409GO:GO:0009505GO:GO:0009735GO:GO:0030145
GO:GO:0031012GO:GO:0033609GO:GO:0045735GO:GO:0046564
GO:GO:0048046Gramene:AT5G20630.1hmmpanther:PTHR31238hmmpanther:PTHR31238:SF21
HOGENOM:HOG000235000InParanoid:P94072InterPro:IPR001929InterPro:IPR006045
InterPro:IPR011051InterPro:IPR014710InterPro:IPR019780iPTMnet:P94072
KEGG:ath:AT5G20630OMA:HFQINSGPaxDb:P94072Pfam:P94072
Pfam:PF00190PhylomeDB:P94072PRIDE:P94072PRINTS:PR00325
PRO:PR:P94072PROSITE:PS00725ProteinModelPortal:P94072Proteomes:UP000006548
RefSeq:NP_197563.1scanprosite:PS00725SMART:SM00835SMR:P94072
STRING:3702.AT5G20630.1SUPFAM:SSF51182TAIR:AT5G20630tair10-symbols:ATGER3
tair10-symbols:GER3tair10-symbols:GLP3tair10-symbols:GLP3Atair10-symbols:GLP3B
UniGene:At.22582UniGene:At.72030UniProt:P94072
Coordinates (TAIR10) chr5:-:6975315..6975950
Molecular Weight (calculated) 21837.40 Da
IEP (calculated) 6.77
GRAVY (calculated) 0.40
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMIIQIFFI ISLISTISFA SVQDFCVADP KGPQSPSGYS CKNPDQVTEN DFAFTGLGTA GNTSNIIKAA VTPAFAPAYA GINGLGVSLA RLDLAGGGVI
101: PLHTHPGASE VLVVIQGTIC AGFISSANKV YLKTLNRGDS MVFPQGLLHF QLNSGKGPAL AFVAFGSSSP GLQILPFALF ANDLPSELVE ATTFLSDAEV
201: KKLKGVLGGT N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)