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AT3G05730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851); BEST Arabidopsis thaliana protein match is: S locus-related glycoprotein 1 (SLR1) binding pollen coat protein family (TAIR:AT3G05727.1); Has 32 Blast hits to 32 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AC011620EMBL:AC012393
EMBL:AK117841EMBL:BT004671EMBL:CP002686EnsemblPlants:AT3G05730
EnsemblPlants:AT3G05730.1entrez:819742GeneID:819742Genevisible:Q9M9M3
GO:GO:0005576GO:GO:0031640GO:GO:0050832Gramene:AT3G05730.1
HOGENOM:HOG000130009InParanoid:Q9M9M3KEGG:ath:AT3G05730OMA:SESYCEA
PaxDb:Q9M9M3Pfam:Q9M9M3PhylomeDB:Q9M9M3PRIDE:Q9M9M3
PRO:PR:Q9M9M3Proteomes:UP000006548RefSeq:NP_187224.1STRING:3702.AT3G05730.1
TAIR:AT3G05730TMHMM:TMhelixUniGene:At.26747UniProt:Q9M9M3
Coordinates (TAIR10) chr3:+:1696070..1696490
Molecular Weight (calculated) 9974.62 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.43
Length 86 amino acids
Sequence (TAIR10)
(BLAST)
1: MAKTLNSICF TTLLLVLLFI SAEIPTAEAN CDTYLGEVTV YYPCRERDCE AQCYEHYPHS CKGECEHHDH VVHHDNEEEH CHCYGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)