AT2G35130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.759 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 54782 Blast hits to 14810 proteins in 305 species: Archae - 4; Bacteria - 41; Metazoa - 619; Fungi - 795; Plants - 51459; Viruses - 0; Other Eukaryotes - 1864 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14807589..14810164 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66737.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.53 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||
| Length | 591 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVAGNALNC LFIDSSGFQR YLGFGVTNLN GATVKSYKQE GFVIDERGKL KRFNRKKLSR KRCGSLRGRG WKYGSGFVDG IFPVLSPIAQ KILSFIQKET 101: DPDKVADVLG ALPSTHASWD DLINVSVQLR LNKKWDSIIL VCEWILRKSS FQPDVICFNL LIDAYGQKFQ YKEAESLYVQ LLESRYVPTE DTYALLIKAY 201: CMAGLIERAE VVLVEMQNHH VSPKTIGVTV YNAYIEGLMK RKGNTEEAID VFQRMKRDRC KPTTETYNLM INLYGKASKS YMSWKLYCEM RSHQCKPNIC 301: TYTALVNAFA REGLCEKAEE IFEQLQEDGL EPDVYVYNAL MESYSRAGYP YGAAEIFSLM QHMGCEPDRA SYNIMVDAYG RAGLHSDAEA VFEEMKRLGI 401: APTMKSHMLL LSAYSKARDV TKCEAIVKEM SENGVEPDTF VLNSMLNLYG RLGQFTKMEK ILAEMENGPC TADISTYNIL INIYGKAGFL ERIEELFVEL 501: KEKNFRPDVV TWTSRIGAYS RKKLYVKCLE VFEEMIDSGC APDGGTAKVL LSACSSEEQV EQVTSVLRTM HKGVTVSSLV PKLMAKSLTV N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)