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AT3G06880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.863
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: binding, nucleotide binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); Has 7353 Blast hits to 5681 proteins in 353 species: Archae - 6; Bacteria - 1399; Metazoa - 2529; Fungi - 1761; Plants - 818; Viruses - 0; Other Eukaryotes - 840 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IISYeggNOG:ENOG410YAY3EMBL:CP002686EnsemblPlants:AT3G06880
EnsemblPlants:AT3G06880.1entrez:819873ExpressionAtlas:F4JD68Gene3D:2.130.10.10
GeneID:819873GO:GO:0007165Gramene:AT3G06880.1hmmpanther:PTHR19850
hmmpanther:PTHR19850:SF33InterPro:IPR001680InterPro:IPR015943InterPro:IPR016024
InterPro:IPR016346InterPro:IPR017986InterPro:IPR019775PANTHER:PTHR19850
PaxDb:F4JD68Pfam:PF00400Pfscan:PS50082Pfscan:PS50294
PRIDE:F4JD68PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
ProteinModelPortal:F4JD68Proteomes:UP000006548RefSeq:NP_187344.5scanprosite:PS00678
SMART:SM00320SMR:F4JD68STRING:3702.AT3G06880.2SUPFAM:SSF48371
SUPFAM:SSF50978TAIR:AT3G06880UniGene:At.53207UniProt:F4JD68
Coordinates (TAIR10) chr3:-:2169899..2175686
Molecular Weight (calculated) 141418.00 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.19
Length 1261 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAYLSSSQST FISCSENSSL DSILVSINVY ILGVISDPEA WISLKQKCIT LLSIEEDNTL FEFSSEHSAL SNLYWGIDSI EASIHPECSE EKTSRLRNSE
0101: RMLQMPALLD EQGTTTSGVP NTVLISFSYF YLSIVSYLQG DSLQSTLHFL QSVLVSPEIV RTDIAPELCE SIFFTPGVYK SDEEIREIAR KYKYRATYYQ
0201: VMSYGETHQP PRECIETPVR RQKEYGQEIF AANAHSVAEK LELSETCEKL LQYQNLHSVD LQEEELNDIF NKIKASRKIE KSENNFEGSQ CLDCNLQEDY
0301: NAEPGKSTRV RCLNEFLNES QPDTREDIGT DTLANIFCVS QQQAHKEANK AYNEDTLANR SSSFIGNFNR SIFEIQAQQS KTTWNTHLED ASSLRQLDLE
0401: EISVFGQKGS ISFEGMRRNL QTKKRGNGLE TLSRRAPTMD LWMNLQSLIK EVLGNADEKY VSEVTMIYQM LNRKEGFKYS MLKDVILDQL FTAISSSEEK
0501: TVIKASMTAL TKIISVNRTA LEEVKRKGLN LSHLANALKQ NVQEAAILIY LIKPSPTEIK SLELLPALVD VVASTSSSSS CYTFIPSPSY LTPPAASLMI
0601: IEVLITAFDH ATNTMHLAAI SSPSVLCGLL DVAKSGNSGE FISLTSILVK CMQFDGLHRK YIYQHTRVAP FAHLLQSKDQ EEICIALQFL HEVLKIPRSS
0701: AIKILQQIKK EGSFDIKVTL LHCIKHLQGD HKLFAADILL QLNALDSPPE NKKYRNEATR ALLDAVTYSE GSNMQLLSTF ILANIGGTYS WTGEPYTAAW
0801: LMKRGGLTSM SHMNMIRNIN WSDECLQDTG IDGWCCKIAR RIIDTGKATF CGLQEGLKSK NKSVSKACLI AIAWLSIEIS KGPNSLKYSA CEVLLDEVAQ
0901: FLHPGLELEE RLLACICIYN FSSGKGIHKL VNFSEGVRES LRRLSHVTWM ADELHKATYY LFSKSDQRIS CVHTQTVEMH QSGSGAVTAL IYHKGLLFSG
1001: FSDGSIRVWN VNKKIATLLW DIKEHKSTVT CFSLSETGEC VLSGSADKTI RVWQIVKGKL ECAEVIKTKD SIRKLEAFGN MIFVITKGHK MKLLDSSRIS
1101: QSIFKGKGVK SMVSAQGKIY IGCIDTSIQE LIVANKREKE IKAPTRSWRL QNKPINSVVV YKDMLYSSST YVEMSNIKDL RRNYEPQMSI TAEKGSNIVA
1201: MGVVEDFIYL NRSSSANTLQ IWLRRTQQKV GRLSAGSKIT SLLTANDIVF CGTEAGLMDP F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)